User: ashenafymamo

gravatar for ashenafymamo
Reputation:
0
Status:
New User
Last seen:
5 hours ago
Joined:
7 months, 2 weeks ago
Email:
a***********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by ashenafymamo

<prev • 5 results • page 1 of 1 • next >
0
votes
0
answers
160
views
0
answers
Comment: C: CIRIquant IndexError while running the prep_CIRIquant
... I think it might be good to answer my own question here. With the support of the author of the tool, I found out that the error was created due to extra space present at the end of the `sample.lst` file. Thus, removing the extra spaces is the solution. Thank you `Jinyang` for your immediate respon ...
written 4 months ago by ashenafymamo0
0
votes
0
answers
160
views
0
answers
CIRIquant IndexError while running the prep_CIRIquant
... I am running [CIRIquant][1] on UBUNTU 20.04 LTS following the guidelines indicated on https://ciriquant-cookbook.readthedocs.io/en/latest/de.html. After a successful circRNA quantification step, I run the Differential expression analysis with biological replicates. I also run the `prepDE.py -i sam ...
prep_ciriquant ciriquant rna-seq written 4 months ago by ashenafymamo0
0
votes
0
answers
97
views
0
answers
Running FUCHS error
... I am trying to analyze circular RNA. I have used STAR for alignment and DCC for detection. after this, I am trying to run FUCHS using the following parameters: ` FUCHS -D /RNA/rna_anal/circrna/DCC/CircRNACount \` `-J /RNA/rna_anal/circrna/sortedbam_paired/mkAChimeric.out.junction \` `-F /RNA/rna_ ...
circular rna written 4 months ago by ashenafymamo0
0
votes
0
answers
223
views
0
answers
Comment: C: miRDeep2.0.1.2 run showing RNAfold: invalid option -- n
... first run mapper.pl using: mapper.pl reads.fa/1-12h-mockA.fasta -c -i -j -l 18 -m \ -p refdb.fa -s col_1-12h-mockA.fa -t col_V_genom_1-12h-mockA.arf -v Then I run miRDeep2.pl using: miRDeep2.pl col_1-12h-mockA.fa susScr3.fa col_V_genom_1-12h-mockA.arf ssc_mature_ref.fa mature_other.fa ssc_ha ...
written 5 months ago by ashenafymamo0
0
votes
0
answers
223
views
0
answers
miRDeep2.0.1.2 run showing RNAfold: invalid option -- n
... I am working on RNA-seq data for studying miRNA from porcine samples. I run miRDeep2.0.1.2 on ubuntu (under the bioconda environment). miRDeep2 took 3 hours to run and gave me the results with an error " RNAfold: invalid option -- n ". when I look at the results, I got CSV, HTML, and bed forma ...
rna-seq written 5 months ago by ashenafymamo0 • updated 4 months ago by me.mansoori0

Latest awards to ashenafymamo

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1155 users visited in the last hour