User: balaji

gravatar for balaji
balaji40
Reputation:
40
Status:
New User
Location:
Estonia
Last seen:
1 year, 5 months ago
Joined:
6 years, 6 months ago
Email:
b*******@yahoo.com

about me

Posts by balaji

<prev • 8 results • page 1 of 1 • next >
2
votes
5
answers
5.1k
views
5
answers
Answer: A: Can Rnaseq Reads Be Used For Genome Assembly
... Came across some more tools (some included from above) AGOUTI: improving genome assembly and annotation using transcriptome data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4952227/ Rascaf: Improving Genome Assembly with RNA Sequencing Data https://www.ncbi.nlm.nih.gov/pubmed/27902792 PEP_scaffo ...
written 17 months ago by balaji40
2
votes
3
answers
10k
views
3
answers
Answer: A: Where can I get the mouse mm9 gene annotation file?
... From biomart you can download all annotations for mm9 or other builds or versions. Here is the link for from where you can download for all genes or for your genes of interests have a look at filters for your genes. http://may2012.archive.ensembl.org/biomart/martview/ ...
written 4.6 years ago by balaji40
1
vote
0
answers
704
views
0
answers
(Closed) workshop notes in which journal
... Hi, I attended a workshop and I want to write brief notes about the workshop. Can you suggest some journal which is good to send brief notes on the genomics workshop. Thank you,   ...
genome bioinformatics metagenomics genomics written 4.7 years ago by balaji40
0
votes
2
answers
4.4k
views
2
answers
Answer: A: How To Map Kegg Data - Pathways As Nodes, Compounds As Edges.
... I have a followup question, I want to identify incoming and outgoing edges for eg. http://www.kegg.jp/kegg-bin/show_pathway?hsa00010 to Pentose phosphate pathway (PPP) edge 1 (outgoing) from PPP edge 3 (incoming) citrate cycle 1, 1 (out and incoming) proponate metabolism 1 (out) carbon fixation 1 ( ...
written 6.0 years ago by balaji40
0
votes
3
answers
2.9k
views
3
answers
Comment: C: Which Tools Perform Multiple Sequence Ungapped Alignment
... is there any alternative to clustal, as I mentioned above " Which tools are there apart from Clustal to do this job?" ...
written 6.2 years ago by balaji40
0
votes
3
answers
2.9k
views
3
answers
Comment: C: Which Tools Perform Multiple Sequence Ungapped Alignment
... I should have said this before, I do not want gaps inside the sequences but gaps can be present only at the end of the alignments. Just to say this is not an homework, I want to know if there is any tool which can do the ungapped alignment within the sequence and gaps can be given only in the ends o ...
written 6.2 years ago by balaji40
3
votes
3
answers
2.9k
views
6 follow
3
answers
Which Tools Perform Multiple Sequence Ungapped Alignment
... Hi I would like to do alignment of multiple peptide sequences. I want output as ungapped alignments. Which tools are there apart from Clustal to do this job? Thank you in advance. ...
multiple-alignment sequence alignment written 6.2 years ago by balaji40 • updated 6.1 years ago by Christian2.8k
0
votes
1
answer
1.6k
views
1
answers
Answer: A: Statistics In Pairwise Methylation Chip Data Analysis
... have you done pca or heatmap on this data ? ...
written 6.5 years ago by balaji40

Latest awards to balaji

Popular Question 4.3 years ago, created a question with more than 1,000 views. For Which Tools Perform Multiple Sequence Ungapped Alignment
Scholar 4.6 years ago, created an answer that has been accepted. For A: Where can I get the mouse mm9 gene annotation file?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1034 users visited in the last hour