User: wu.zhiqiang.1020

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Posts by wu.zhiqiang.1020

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Comment: C: how to choose the biggest from multiple lines
... thanks. I am not good at those computing stuff. I am just starting now. thanks ...
written 10 months ago by wu.zhiqiang.102020
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Comment: C: how to choose the biggest from multiple lines
... yes, this is exactly what I want. Just save the longest. thanks. ...
written 10 months ago by wu.zhiqiang.102020
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Comment: C: how to choose the biggest from multiple lines
... the input is like this: Zm00001d000001 T001 438 Zm00001d000001 T002 1842 Zm00001d000001 T005 1842 Zm00001d000002 T001 5025 Zm00001d000002 T002 5034 Zm00001d000002 T005 4551 the final result like this: Zm00001d000001 T002 1842 Zm00001d0 ...
written 10 months ago by wu.zhiqiang.102020 • updated 10 months ago by genomax87k
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how to choose the biggest from multiple lines
... Hi all, I have some gene name data like this. The title as GeneName Isoform Length Zm00001d000001 T001 438 Zm00001d000001 T002 1842 Zm00001d000001 T005 1842 Zm00001d000001 T006 1503 Zm00001d000002 T001 5025 Zm00001d000002 T002 ...
gene written 10 months ago by wu.zhiqiang.102020 • updated 10 months ago by genomax87k
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Comment: C: how to extract the longest isoform from trinity outfils
... thanks, I find it and make it go through. thanks again ...
written 3.4 years ago by wu.zhiqiang.102020
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Comment: C: how to extract the longest isoform from trinity outfils
... It need other pm file to load and the same time. I find this link. But I have to search other more pm files also thanks ...
written 3.4 years ago by wu.zhiqiang.102020
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how to extract the longest isoform from trinity outfils
... Dear all, I want to filtered the Trinity outfile for RNAseq assemble. I know this is not the best choice, and there are some scripts online. but they are all not good to use in my data, Could you give me some suggestion on this? my data like this: (Start with > for name) >TRINITY_DN66086_c ...
assembly rna-seq written 3.4 years ago by wu.zhiqiang.102020 • updated 12 months ago by Shahzad10
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Comment: C: how to use CD_HIT to remove the redundant sequence from trinity output file
... Hi st.ph.n I tried your script, it shown error as Traceback (most recent call last): File "get_longest_iso.py", line 8, in if line.startswith(">"): NameError: name 'line' is not defined could you help me to fix this? I do not know the python. thanks My trinity out start as: >TRI ...
written 3.4 years ago by wu.zhiqiang.102020
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Comment: C: how to use CD_HIT to remove the redundant sequence from trinity output file
... thanks。 I need to read Trinity again. ...
written 3.4 years ago by wu.zhiqiang.102020
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Comment: C: how to use CD_HIT to remove the redundant sequence from trinity output file
... it would be helpful to keep the longest isoforms. but I still could not remove the duplicates from other contrig. right? thanks ...
written 3.4 years ago by wu.zhiqiang.102020

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