User: hirakuda

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hirakuda0
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Posts by hirakuda

<prev • 25 results • page 1 of 3 • next >
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STAR vs Bowtie2 : want to know some efficient way to learn the use
... I am new to use STAR. Can someone please help me to understand me whether I can use STAR to map many reference genomes together in a single command without using any created C++ code? I try to do the same with bowtie2 ,but I could not do it. It will be also helpful if someone can inform me the abo ...
alignment sequencing written 5 months ago by hirakuda0
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Comment: C: Bowtie2 related questions
... In some run I got error *bowtie2-align died with signal 11 (SEGV) (core dumped)* What is it?? ...
written 6 months ago by hirakuda0
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Comment: C: Bowtie2 related questions
... May I map severel bacteria together to get percentage of each bacteria in a sample genome in one run? May I use fasta read files than fastq read files in bowtie2? If I use fastq files, may I use more than one fastq files together? ...
written 6 months ago by hirakuda0
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Comment: C: Bowtie2 related questions
... no bowtie2-align is not in bowtie2-2.2.5. What should I do now? ...
written 6 months ago by hirakuda0
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Comment: C: Bowtie2 related questions
... I am running it from directory bowtie2-2.2.5 . When I run ./bowtie2 -h , I got ERR bowtie2 and bowtie2-aligng should be in same directory. I am new to this area. Can you lease suggest a solution?Please also give me a idea of chod? When to use this command? before going into directory or outside? Whi ...
written 6 months ago by hirakuda0
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bacteria genome mapping using bwa
... Please someone suggest how to use bwa to map bacteria genomes to a sample? I want to use bwa mem. I did something bwa mem *bacteria ref* *original sample* > align.mem.out. and got some error. I dont know whether I am using it correctly. Can someone please suggest the correct command to use bwa t ...
genome sequence written 6 months ago by hirakuda0
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Comment: C: Bowtie2 related questions
... When I am trying to use bowtie2-build in Linux it will show an err ,bowtie-align should in same directory. What does it mean? How to recover this err? More over when I did which bowtie2 I get a path. When I did which bowtie2-align I did not get any path. Please let me know what is the error? ...
written 6 months ago by hirakuda0
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Comment: A: Bowtie2 related questions
... PLease someone suggest some link for tutorial. ...
written 6 months ago by hirakuda0
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Comment: C: Bowtie2 related questions
... Any simpler tutorial guide to how to use bowtie2? ...
written 6 months ago by hirakuda0
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Bowtie2 related questions
... What is the difference between bowtie and bowtie2? What are the steps to run bowtie2? ...
assembly tutorial alignment sequencing written 6 months ago by hirakuda0

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