User: cagdas

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cagdas10
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Posts by cagdas

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Comment: C: Different results between papers and GEO2R
... Also following paper had found a downregulation. What can be the problem Kevin? https://www.nature.com/articles/s10038-020-0746-6 ...
written 21 hours ago by cagdas10
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Comment: C: Different results between papers and GEO2R
... Kevin thank you for your detailed reply. ...
written 1 day ago by cagdas10
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Comment: C: Different results between papers and GEO2R
... Yes, I confirmed it, no problem... ...
written 1 day ago by cagdas10
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Comment: C: Different results between papers and GEO2R
... I did it, and obtained same results. ...
written 1 day ago by cagdas10
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Different results between papers and GEO2R
... Hi, I performed a DE miRNAs analyses via GEO2R for https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE78775. I obtained an upregulation for miR-148a in tumors compared with normal. When I search miR-148a in Pubmed, unfortunately a lot of paper say it is downregulated (in exp., https://www.ncbi.nlm.nih. ...
microarray geo2r written 1 day ago by cagdas10 • updated 1 day ago by ATpoint36k
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Comment: C: Group definition and logFC calculation in GEO2R
... Thank you Kevin, I will try to write them Best regards ...
written 3 months ago by cagdas10
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Comment: C: Group definition and logFC calculation in GEO2R
... Hi Kevin, Thank you for your reply. I think, it is not related to cell cycle stage. Because when I review another IDs, I see the other numbers such as G3-G4... GEO ID is GSE24279 Thank you ...
written 3 months ago by cagdas10
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Comment: C: Group definition and logFC calculation in GEO2R
... Hello, I have two groups: Pancreatic cancer and control, I defined it in GEO2R via Defined Groups menu. 1. (blue): Pancreatic cancer 2. (pink): Control According to your message the result should be Pancreatic Cancer / Control. Is it true.? I see below code in GEO2R codes. What is the meaning of i ...
written 3 months ago by cagdas10

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