User: Nuthatch

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Nuthatch0
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Posts by Nuthatch

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Comment: C: How to check if a word is present in a column of a .ped file
... It gives me this message: `awk: program limit exceeded: maximum number of fields size=32767` ...
written 4 weeks ago by Nuthatch0
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How to check if a word is present in a column of a .ped file
... Hello everyone, I have a mydata.ped file, made up of 10215 rows (individuals) that looks like this: 1 MAL-005 0 0 1 1 3 3 4 4 2 MAL-006 0 0 3 3 1 1 4 4 3 MAL-007 1 1 0 0 1 3 4 4 4 MAL-008 1 1 0 1 1 3 3 4 Now, on bash, I need to check if the word "MAL-007" is pre ...
ped bash written 4 weeks ago by Nuthatch0 • updated 4 weeks ago by chrchang5237.3k
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Problems removing a subset of individuals from ped files
... Hello everyone, I have a mydata.ped file, made up of 10215 rows (individuals) that looks like this: 1 MAL-005 0 0 1 1 3 3 4 4 2 MAL-006 0 0 3 3 1 1 4 4 3 MAL-007 1 1 0 0 1 3 4 4 4 MAL-008 1 1 0 1 1 3 3 4 Now I want to obtain a new ped file in which 3723 of the 1 ...
remove plink ped written 5 weeks ago by Nuthatch0
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Comment: C: Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
... I've met the same problem. Did you manage to solve it? ...
written 5 weeks ago by Nuthatch0
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How to get a bayenv2 usable file from a .geno file
... I have a [.geno file][1], containing genotypes of present-day and ancient individuals (https://reich.hms.harvard.edu/downlo...blished-papers). What I want to do is to use bayenv2 on these data, looking for a correlation between alleles frequencies and a specific environmental variable. In particular ...
correlation snp bayenv geno written 8 weeks ago by Nuthatch0

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