User: vibes1002003

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vibes100200330
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Location:
Germany
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https://sites.google.c...
Last seen:
1 day, 21 hours ago
Joined:
6 years, 10 months ago
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Posts by vibes1002003

<prev • 16 results • page 1 of 2 • next >
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Comment: A: single cell data analysis
... Thanks for the answer. I will try tools you mentioned above. I also encounter some related to duplication of cell barcode in matrix file. Have someone experience in this direction? Second, is it possible to combine umi tag with cellbarcode in matrix or count file fom 10x data ? ...
written 5 weeks ago by vibes100200330
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single cell data analysis
... Dear all, I am working on single cell dataset from 10x . I am trying to integrate two datasets from two different experiment but both dataset from 10x. I would like to know when integrate two datasets, the name of barcodes have an effect on tsne clustering. For integtating two datasets, what would ...
sequencing written 5 weeks ago by vibes100200330
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Answer: A: PhD Studentship in Bioinformatics, developing visualisation and analysis tools f
... Hello Miles, how to apply for this position? ...
written 2.7 years ago by vibes100200330
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Comment: C: Storage Of Dna Database In Mongodb
... I am sorry I pose so many mysteries. I am simply looking for web-link/source where there is example of web-tool development in bioinformatics (biological tool) using Mean Stack platform. Definitely I posted here because of mongodb, which is also part of mean. ...
written 3.1 years ago by vibes100200330
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Answer: A: Storage Of Dna Database In Mongodb
... Anyone know the source where application of Mean Stack(http://mean.io/#!/) in NGS/bioinformatics web development given for instance any tutorial or website ? Thanks!! ...
written 3.1 years ago by vibes100200330
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Answer: A: Bioinformatician/Bioinformatics Data Analyst, Vienna, Austria
... What means by "synopsis of the research program" ? What is minimum degree requirement of this position? Can Master's degree candidate can also apply ? Like I had done MSc in bioinformatics with 6+ years of experience in bioinformatics and NGS. am I eligible to apply? is it research based position ...
written 3.2 years ago by vibes100200330
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... How can we make non-altered case since we need two groups -altered and unaltered for generating KM plot ? for instance you take those genes which are altered at least once in all the patients then how can we make unaltered case?  ...
written 4.0 years ago by vibes100200330
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Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... I would like to know how can extend this code for survival analysis of multiple genes altogether or cancer subtypes ?  I want to check effect of set of genes/ subtypes on survival probability through KM plot? ...
written 4.0 years ago by vibes100200330
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Answer: A: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... I would like to know reason why number of depth reads supporting particular methylation site in methratio.py does not cross 65,535? As I found in line 160 and 161 of methratio.py (a python program in bsmap to call methylation sites): except OverflowError: depthcr1[index] = 65535 elif seq[index-pos] ...
written 4.0 years ago by vibes100200330
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Answer: A: How to annotate coding and long non-coding RNA together using transcriptome data
... Please look into this R Package: https://cran.r-project.org/web/packages/WGCNA/index.html this package is useful for finding  co-expressed genes in the form of modules or clusters. Here is some link of papers uses this package for similiar purpose. http://labs.genetics.ucla.edu/horvath/Coexpress ...
written 4.1 years ago by vibes100200330

Latest awards to vibes1002003

Popular Question 2.7 years ago, created a question with more than 1,000 views. For How to calculate standard deviation between replicate in mRNA seq data?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For DNA methylation data analysis
Popular Question 4.4 years ago, created a question with more than 1,000 views. For How to calculate standard deviation between replicate in mRNA seq data?

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