User: citronxu

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citronxu10
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Posts by citronxu

<prev • 32 results • page 1 of 4 • next >
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Comment: C: Heatmap making via Complexheatmap package
... yeah, sure. ![enter image description here][1] [1]: https://iili.io/JQw2m7.png ...
written 6 weeks ago by citronxu10
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Heatmap making via Complexheatmap package
... Hello there, Recently I've changed into MacOS and encountered some problems in Rstudio using. The thing is, when I plotted my data into heat map using ComplexHeatmap package in R studio, following the commands mat <- read.table("xxx.csv", header = T, na.string = "-", sep = ";") #read the t ...
R heatmap written 6 weeks ago by citronxu10
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Comment: C: extract promoter sequence from whole genome
... HI, thank you for the reply. I feel so sorry for my stupid question :/, ya, after I saw you comment I then turned to check NCBI database and found exact prometer sequences recorded... ...
written 7 weeks ago by citronxu10
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extract promoter sequence from whole genome
... Hi there, I'm right now working with Brassica napus, and would like to extract promoter sequence of certain genes on Linux platform. First I look through the brassica napus database, Ensembl and genoscope, found the information of each predicted genes (cDNA and polypeptide sequences), yet no infor ...
sequence written 7 weeks ago by citronxu10
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Comment: C: Unable to install samtools in macOS Catalina
... many thanks for that, got samtools installed.:) ...
written 8 weeks ago by citronxu10
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Unable to install samtools in macOS Catalina
... Hi,there I'm new in bioinformatics, and now working with macOS. According to information given online, the new version of macOS - Catalina - due to the concern of security, the storage has been divided into two partitions, in which one named 'Macintosh HD' is read-only. When I tried to install sam ...
samtools macos written 8 weeks ago by citronxu10 • updated 9 days ago by rank0
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Comment: C: how to adjust the value interval of axis of the bar chart created via barplot in
... Hallo, yes, I've tried to build the barchart wiz 'barplot' package and the code I used is as below barplot(mat, main = "Summary of GO Analysis in Leaves", beside = TRUE, col = c("red","orange","pink"), las = 2, cex.names = 0.6, cex.axis = 0.7, horiz = T, xlab = "Gene Ratio") and consequently I ...
written 9 weeks ago by citronxu10
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Comment: C: error arising when create heatmap in R
... thank you, it really works. But I'm still wondering is it possible to assign certain color, say, black, to NA plots in the heatmap? ...
written 3 months ago by citronxu10
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Comment: C: error arising when create heatmap in R
... log2foldchange of DEGs ...
written 3 months ago by citronxu10
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error arising when create heatmap in R
... hello, I'm dealing with DEG dataset which contains many NAs in certain treatments from RNA-seq analysis, and gonna make a heatmap in R. when I used the ComplexHeatmap package in R, following error was poping up: > Error in hclust(get_dist(t(submat), distance), method = method):NA/NaN/Inf in fo ...
R rna-seq heatmap written 3 months ago by citronxu10 • updated 3 months ago by malteherold60

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