User: ete

gravatar for ete
ete100
Reputation:
100
Status:
Trusted
Location:
Germany
Last seen:
1 month ago
Joined:
7 years, 9 months ago
Email:
l*****@gmail.com

Posts by ete

<prev • 20 results • page 1 of 2 • next >
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Comment: C: Which tools do you miss?
... Could you provide a link? This would be helpful. ...
written 5 weeks ago by ete100
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Comment: C: Which tools do you miss?
... Would be very happy for feedback! ...
written 5 weeks ago by ete100
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Forum: Which tools do you miss?
... Hi everyone, I wondering which bioinformatic tools / open source software are you missing, are outdated or difficult to use? I am looking for a side project as a software developer but want to implement something useful. Any feedback would be appreciated Cheers ...
software tools forum written 5 weeks ago by ete100 • updated 5 weeks ago by Kevin Blighe65k
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VCF to plink format wrong variant id
... Hi, I converted my VCF file into plink binary formats by using plink2. As variant ID I need the following format (chrom_pos): chrom snp cm pos a0 a1 i 0 0 Chr1_657 0.0 657 T C 0 1 0 Chr5_1168 0.0 ...
vcf plink written 7 weeks ago by ete100
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Bowtie query position
... Hi, is it possible to get not only the position of the reference strand but also of the query sequence? I know it is possible to "find" the sequence on the query but that's a not so nice solution... Thanks  ...
alignment written 4.8 years ago by ete100 • updated 4.8 years ago by Devon Ryan96k
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Comment: C: ViennaPackage define output file name and location(RNAplfold)
... Thanks! I am not using the -o paramater and RNAplfold creates automatically a file. Thanks for pointing me to this, I think I will try some of this tips: http://stackoverflow.com/questions/4675728/redirect-stdout-to-a-file-in-python Thanks for sharing your code but I am done with implementing my c ...
written 5.2 years ago by ete100
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ViennaPackage define output file name and location(RNAplfold)
... Hi!   Does anybody knows whether it's possible to set the output file name and location of the ViennaPackage  tool rnaplfold? The default settings (sequence name and current directory) are not convenient. I am calling the tool via Python subprocess module. Any help would be very apprenticed, th ...
sequence written 5.2 years ago by ete100 • updated 5.1 years ago by Biostar ♦♦ 20
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Answer: A: combining fasta files
... You can use one of my software for this task, BlasterQt: http://www.snowformatics.com/blaster.html Have a look at the format converter tab. Let me know if you need further help. Cheers, Stefanie   ...
written 5.7 years ago by ete100
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Comment: C: Open source bioinformatics tools: Blaster, Primer Factory, Labtools
... Another question or opinion, would it be acceptable if the user install all library him/herself and run the script via "python  my_script.py"? I am not familiar with packaging on Linux/Mac, perhaps later I will have some time to read into. Would this option be ok for the time being? ...
written 5.7 years ago by ete100
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Comment: C: Open source bioinformatics tools: Blaster, Primer Factory, Labtools
... Yes, exactly! @RamRS Where would be the best place for advertising the tools for Linux users? At Biostars? ...
written 5.7 years ago by ete100

Latest awards to ete

Popular Question 4.8 years ago, created a question with more than 1,000 views. For ViennaPackage define output file name and location(RNAplfold)
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Beta testing bioinformatic tools
Popular Question 4.8 years ago, created a question with more than 1,000 views. For RNAduplex sequence input format
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Best Practices/Methods For Developing Bioinformatics Related Web Applications
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Open source bioinformatics tools: Blaster, Primer Factory, Labtools
Appreciated 5.7 years ago, created a post with more than 5 votes. For Open source bioinformatics tools: Blaster, Primer Factory, Labtools

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