User: divya.samuel

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Posts by divya.samuel

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Comment: C: Associating VDJ clonotyping data with scRNA-seq in Seurat
... Hi Jared & Atakanekiz, Thank you for the above information on how to incorporate VDJ information to gene expression data for scRNA seq. I have a question regarding visualizing clonotypes. I have used the Seurat integrated analysis approach to analyze my gene expression data. The metadata contai ...
written 8 months ago by divya.samuel0
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Comment: C: Integrating VDJ sequencing data with Seurat
... Hi Jared, How exactly would one remove/ignore columns from VDJ data with FALSE or None? Is there a command to ignore "FALSE" or "None" values? Thank you! ...
written 9 months ago by divya.samuel0
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Integrated analysis of TKI-treated and untreated PBMCs - gene expression & vdj libraries
... My experiment is scRNA seq + VDJ analysis from the same samples using 10X Genomics kits. I want to compare the top differentially expressed genes & look for clonotype expansions in PBMCs isolated from timepoint 0 & timepoints 1 from 3 patients. So I have 6 samples: 3 samples per patient & ...
multimodal analysis written 9 months ago by divya.samuel0 • updated 9 months ago by swbarnes29.4k

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