User: Neal

gravatar for Neal
Neal50
Reputation:
50
Status:
New User
Location:
Norway
Last seen:
2 years, 11 months ago
Joined:
7 years, 7 months ago
Email:
n*******@gmail.com

Moving from wet lab to dry lab and grappling with the beauty and complexity of big data.

Posts by Neal

<prev • 23 results • page 1 of 3 • next >
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Answer: A: liftOver error: not reading the coordinate position correctly?
... Ok so I finally found out what was going wrong. I misread line 2146483 as 2146843. Hence I could not find the error. I split the file into two using the linux split command split -l 1230663 ./Blood_pressure/ICBP-summary-Nature.bed ./Blood_pressure/split_blood_pressure And that is when I realize ...
written 5.6 years ago by Neal50
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Comment: C: liftOver error: not reading the coordinate position correctly?
... Hmm you are correct. I tried it at home and these lines were converted perfectly. The file is the usual size for human snps (~2.5 million snps) so, the web version may not work. Maybe I could try to split the input file into ~1.2 million line chunks and then join the 2 output files (assuming it does ...
written 5.7 years ago by Neal50
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Comment: C: liftOver error: not reading the coordinate position correctly?
... Hei komal, I have just updated the post with some of the lines ...
written 5.7 years ago by Neal50
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Comment: C: liftOver error: not reading the coordinate position correctly?
... Hei komal, and thanks for the comment. The original file was a CSV file which I converted to a tab delimited file through perl..so I am pretty sure there ought to be a tab between the first and second field on this line... ...
written 5.7 years ago by Neal50
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liftOver error: not reading the coordinate position correctly?
... Hi all, I am getting an error while running the liftOver tool http://genome.sph.umich.edu/wiki/LiftOver locally on my Mac OSX The code I execute is as follows: ~/Downloads/liftOver ./ICBP-summary-Nature.bed ~/Downloads/hg18ToHg19.over.chain.gz ./converted_icbp_coordinates.bed ./unlifted_icbp_coo ...
hg18 snp liftover hg19 written 5.7 years ago by Neal50 • updated 4.7 years ago by morovatunc460
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Comment: C: Perl: Implementing A Circular List /Circular Iteration
... Yea I am relieved that I could figure it out with a little bit of nudge from you! :) ...
written 6.8 years ago by Neal50
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Comment: C: Perl: Implementing A Circular List /Circular Iteration
... Ah so long as one wants to improve! ...
written 6.8 years ago by Neal50
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Comment: C: Perl: Implementing A Circular List /Circular Iteration
... Many many thanks Michael :) It took me some time to understand what you meant and how it would help. But I did it! Finally! yay! ...
written 6.8 years ago by Neal50
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Comment: C: Perl: Implementing A Circular List /Circular Iteration
... It does...I want to get better at programming. I am stuck in this... ...
written 6.8 years ago by Neal50
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Perl: Implementing A Circular List /Circular Iteration
... Hello all, I need a bit of help implementing a circular list or perhaps a circular iteration( whichever can get the job done) What is required For a given peptide string , find all the possible sub-peptides including single amino acids and print their masses. For example's sake let's say A = 1, B ...
perl list written 6.8 years ago by Neal50 • updated 6.8 years ago by Michael Dondrup47k

Latest awards to Neal

Popular Question 4.1 years ago, created a question with more than 1,000 views. For Perl: Ignoring Repetitive K-Mers In Hash Construction
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Perl: Ignoring Repetitive K-Mers In Hash Construction
Supporter 4.4 years ago, voted at least 25 times.
Popular Question 5.6 years ago, created a question with more than 1,000 views. For Perl :Fuzzy Matching Problem
Scholar 5.6 years ago, created an answer that has been accepted. For A: liftOver error: not reading the coordinate position correctly?
Autobiographer 5.7 years ago, has more than 80 characters in the information field of the user's profile.
Popular Question 6.3 years ago, created a question with more than 1,000 views. For Perl :Fuzzy Matching Problem

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