User: Shaurya Jauhari

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China
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shauryajauhari
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Last seen:
5 months, 1 week ago
Joined:
6 years, 7 months ago
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about me

Posts by Shaurya Jauhari

<prev • 33 results • page 1 of 4 • next >
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Answer: A: How To Extract Go Terms From A Given Kegg Id
... Via transitivity; **GO** <-> Orthology (KO terms), Orthology <-> PubmedID, PubmedID <-> **Pathway**; KEGG API/ LinkDB allows for structuring a many-many linkage map between GO and Pathway terms that isn't directly available (although marked 'routed' on the official page). This has ...
written 6 months ago by Shaurya Jauhari40
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Comment: C: Variable definition in R
... Thanks zx8754. Few things here though: 1. I completely dig that **lapply()** usage shall be a viable alternative, and it works; just that the same error is engendered. 2. The question here is not just to read a file, rather also to save it as a R data object for further manipulation. 3. The vari ...
written 7 months ago by Shaurya Jauhari40
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(Closed) Variable definition in R
... Hi everyone. I have the following line of code where R rejects the expression on the left to be treated as an assignee variable. for (i in 1:length(my_list)){ paste(eval(parse(text='names(my_list[i])')),"table",sep="") <- read.table(paste("./foo/",paste(eval(parse(text='names(my_list[i] ...
R written 7 months ago by Shaurya Jauhari40
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coordinates of telomeres and ribosomal DNA of Arabidopsis Thaliana.
... The parameters in question are not well documented in literature. I am looking for chromosomal specific locations here. ...
ribosomal dna arabidopsis thaliana telomeres written 13 months ago by Shaurya Jauhari40 • updated 12 months ago by Biostar ♦♦ 20
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Answer: A: Error installing miso
... I am abolutely new to this. How to go about the miso pipeline right from the stratch? ...
written 24 months ago by Shaurya Jauhari40
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Comment: C: Mixture of Isoforms (MISO) tool for ascertaining isoforms' (alternatively splice
... I downloaded and unwrapped the misopy-0.5.4.tar.gz file from the repository. Shifting to the directory and typing miso gives me the following output: Traceback (most recent call last): File "/usr/local/bin/miso", line 5, in from pkg_resources import load_entry_point File "/usr/local/lib/ ...
written 24 months ago by Shaurya Jauhari40
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Different reflections from the techincal replicates.
... An experimental instance (mock-treated) was analyzed to have 24 upregulated genes (significantly differentially expressed). The technical replicate had none, which is apparently unusual. Is it all good here computationally or something went wrong? Could the biological provenance be questioned? I am ...
rna-seq written 2.0 years ago by Shaurya Jauhari40
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From the revered Tuxedo Suite for NGS data analysis, under what circumstances could the usage of Cuffmerge be thwarted?
... In a scenario where we are to compare paired-end RNA-Seq data from an instance of technical replicate, my understanding is that the Cufflinks output (pointedly transcripts.gtf) from each condition (mock-treated) will represent specific reads; until they are merged together to actually superimpose an ...
ngs data analysis rna-seq cuffmerge written 2.0 years ago by Shaurya Jauhari40 • updated 2.0 years ago by colindaven1.6k
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Comment: C: Trimming Overrepresented Sequences in paired-end RNA-Seq data, as underlined by
... Thank you for your reply. Contrarily, is it also usual to have no overrepresented sequences at all. ...
written 2.0 years ago by Shaurya Jauhari40
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Trimming Overrepresented Sequences in paired-end RNA-Seq data, as underlined by FastQC.
... I am analyzing a RNA-Seq paired end sequence data. I have used cutadapt before to trim overrepresented sequences as derived from a fastqc report. However, this time around there is a slight twist in application. One of the reads I4_R1.fastq has the following attribute, >>Overrepresented ...
paired-end rna-seq fastqc written 2.0 years ago by Shaurya Jauhari40 • updated 2.0 years ago by genomax70k

Latest awards to Shaurya Jauhari

Popular Question 13 months ago, created a question with more than 1,000 views. For SVM for classified gene expression data
Popular Question 20 months ago, created a question with more than 1,000 views. For SVM for classified gene expression data
Popular Question 3.6 years ago, created a question with more than 1,000 views. For SVM for classified gene expression data

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