User: Puthier

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Puthier250
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Posts by Puthier

<prev • 15 results • page 1 of 2 • next >
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Answer: A: Tool To Generate Proportional Venn Diagrams?
... I think that the venneuler R package could do the trick. library("venneuler") vd <- venneuler(c(A=0.3, B=0.3, C=1.1, "A&B"=0.1, "A&C"=0.2, "B&C"=0.1 ,"A&B&C"=0.1)) plot(vd) Depending on your needs, you can also have a look at the venn function in gplots package (not proportio ...
written 8.4 years ago by Puthier250
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Comment: C: Conservation Of Coding And Non Coding Exons
... Thanks Chris. I will read this article that seems very nice. ...
written 8.4 years ago by Puthier250
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Conservation Of Coding And Non Coding Exons
... Hi to everyone, I'm looking for bioinformatic papers describing the average level of conservation, across vertebrates, of both coding (part of CDS) and non coding exons (particularly those found in the 5'UTR). Thanks for help. ...
conservation exon written 8.4 years ago by Puthier250 • updated 8.4 years ago by Chris Evelo10.0k
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Answer: A: Text Mining Based Functional Enrichment Of Gene Lists
... GREAT ...
written 8.7 years ago by Puthier250
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Comment: C: Combining Gene Expression Microarray Datasets
... I think, you should not use euclidean distance in this case. Pearson based distances would be a better choice. ...
written 8.7 years ago by Puthier250
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Answer: A: Chip- Chip Seq - Seaching For Curated Transcription Factors
... Uniprobe could be also of interest. ...
written 8.7 years ago by Puthier250
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Comment: C: Web Resources To Find Cancer Indication Where A Given Gene Is Amplified
... Use query by annotation terms (e.g 1q21). Use tab key to get completion... ...
written 8.8 years ago by Puthier250
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Answer: A: Normalize Large Number Of Cel Files
... You could also have a look at XPS Bioconductor package. "The package handles pre-processing, normalization, filtering and analysis of Affymetrix GeneChip expression arrays, including exon arrays (Exon 1.0 ST: core, extended, full probesets), gene arrays (Gene 1.0 ST) and plate arrays on computers wi ...
written 8.8 years ago by Puthier250
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Answer: A: Expression Databases For Human Genes
... I would also recommend: GeneSapiens.org (human) ImmGen (human and mouse) BloodExpress (mouse) Finally, you can also use GEO Profiles using operators in the search field (with the preview/Index tab): (BCL2[Gene Symbol]) AND (30[Min Value Rank]) ... ...
written 8.8 years ago by Puthier250
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Comment: C: Where Can I Find Fastq Data (Ngs Raw Data) And Published Results?
... A great idea ! I will use it as soon as possible. Thanks ...
written 8.9 years ago by Puthier250

Latest awards to Puthier

Appreciated 8.4 years ago, created a post with more than 5 votes. For Conservation Of Coding And Non Coding Exons
Student 8.4 years ago, asked a question with at least 3 up-votes. For Conservation Of Coding And Non Coding Exons
Teacher 8.9 years ago, created an answer with at least 3 up-votes. For A: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?

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