User: zak
zak • 0
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Posts by zak
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Comment:
C: run a tool from python
... os.chdir(my path) \\
cmd = perl + pathBam + path... \\
subprocess.call(cmd, shell=true)
...
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Comment:
C: run a tool from python
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i knew i have to use os.chdir () but i dont know how to apply it.
os.chdir (my path) and the line after I type my command and after my subprocess.call? ...
written 2 days ago by
zak • 0
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... Hello,
I have a command that it is executed normally in a directory where we will generate our results, when we want to do it from linux it suffices to be in the directory "result" and run the command (perl -input .....).
I want to run it from python.... I created my variable:
cmd = perl input... ...
written 2 days ago by
zak • 0
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Comment:
C: Merging multiple tsv files
... i want to do it with python ...
written 3 days ago by
zak • 0
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Comment:
C: Merging multiple tsv files
... thank you so much this is what i wanted to do exactly ...
written 3 days ago by
zak • 0
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... Hi!
i have a multiple tsv files, do you have any methods to merge them in a single file with only header ? ...
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... hello !
I want to merge two VCF files (from variant calling) that I obtained with two different tools GATK and TVC but the problem is for the same position, each tool returns me a different variant (not all positions) . do you have an idea to normalize between the two positions and which variant ...
written 9 days ago by
zak • 0
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... Hello !
I want to concatenate several VCF files,
do you have explicit python scripts to do it ? ...
written 10 days ago by
zak • 0
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... Yees it is installed ! but i don't understand the region bed files and the primer-trim ... it's necessary to running...do you have any idea ?. BTW I'm a beginner in bioinformatics ...
written 13 days ago by
zak • 0
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