User: lsbw

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lsbw0
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Posts by lsbw

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Comment: A: Get Expression Table from CEL raw data with R
... Dear Kevin, thank you very much for your answer and please excuse my late response! I really appreciate you trying to help me! So I used the following steps: first I set my working directory next I load oligo library(oligo) I read my CEL files using raw_data <- read.celfiles(list ...
written 8 months ago by lsbw0
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Comment: A: Analysing Microarray Data In Bioconductor
... Hi! Does somebody know if the tutorial from theBioinformatics KnowledgeBlog is still available somewhere? I cannot open it anymore and I am struggling with the exact same task.. Thanks a lot! ...
written 8 months ago by lsbw0
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Get Expression Table from CEL raw data with R
... Hi everybody, I am a newbie working with R, so please excuse some potential confusion. I have some CEL raw files and would like to generate a table with expression levels. My CEL data is based on a Clariom S Mouse CHIP. I used the oligo package to import and read my CEL files, which gives my a ...
R cel microarray written 8 months ago by lsbw0
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How to match CHIP information about genes to feature data from downloaded GEO dataset in R?
... Hi everybody, I would like to analyze a dataset from GEO (GSE102133 or alternatively GSE102134). I downloaded the data and created an Expression Set and a matrix from my Expression Set. I am new to analyzing this kind of data in R and I am not sure how to match the features of my matrix to the gen ...
geo annotation microarray R written 9 months ago by lsbw0

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