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Comment: Comment: differential gene expression analysis when not all samples have an untreated cou
15 days ago by nhaus ▴ 310
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312
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Comment: Comment: pseudobulk differential expression design matrix
10 weeks ago by nhaus ▴ 310
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312
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Comment: Comment: pseudobulk differential expression design matrix
10 weeks ago by nhaus ▴ 310
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Comment: Comment: DESeq2 design formula considerations
18 months ago by nhaus ▴ 310
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848
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Comment: Comment: gvcf to bam or fastq
19 months ago by nhaus ▴ 310
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1.7k
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Comment: Comment: Tuning seurat integration strength to prevent overcorrection
19 months ago by nhaus ▴ 310
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1.7k
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Comment: Comment: Tuning seurat integration strength to prevent overcorrection
19 months ago by nhaus ▴ 310
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874
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Comment: Comment: Function/Package which shows how cells correspond to one another between UMAPs
21 months ago by nhaus ▴ 310
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1.2k
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Comment: Comment: Using Leiden algorithm to cluster bulk RNA samples
2.1 years ago by nhaus ▴ 310
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2.1k
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Comment: Comment: plink2 tell "--glm" to use dosage instead of hardcalls
2.1 years ago by nhaus ▴ 310
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1
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960
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Comment: Comment: differential expression RNASeq DESeq2
2.2 years ago by nhaus ▴ 310
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1.4k
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Comment: Comment: Strange speed up in GATK LeftAlignIndels
2.6 years ago by nhaus ▴ 310
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1.2k
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Comment: Comment: IMPUTE2 minimal number of SNPs per chunk
2.8 years ago by nhaus ▴ 310
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1.2k
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Comment: Comment: IMPUTE2 minimal number of SNPs per chunk
2.8 years ago by nhaus ▴ 310
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861
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Comment: Comment: Why are there nucleotides in the reference genome which are also minor alleles i
2.8 years ago by nhaus ▴ 310
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1.9k
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Comment: Comment: Ambiguous SNPs
2.9 years ago by nhaus ▴ 310
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1.3k
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Comment: Comment: SHAPEIT v4 modify keep QUAL FORMAT and INFO field
3.0 years ago by nhaus ▴ 310
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3.3k
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Comment: Comment: VEP is very slow. Fork doesnt seem to work
3.0 years ago by nhaus ▴ 310
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1.4k
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Comment: Comment: GATK ApplyVQSR filtering doesnt work
3.0 years ago by nhaus ▴ 310
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1.9k
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Comment: Comment: Liftover vcf file from hs37d5 assembly to b37 assembly
3.0 years ago by nhaus ▴ 310
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1
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1.9k
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Comment: Comment: Liftover vcf file from hs37d5 assembly to b37 assembly
3.0 years ago by nhaus ▴ 310
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1.2k
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Comment: Comment: High confident germline SNP and INDELS for VQSR for reference genome GRCh37
3.0 years ago by nhaus ▴ 310
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1.5k
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Comment: Comment: Create Mutational signature plot from vcf file.
3.0 years ago by nhaus ▴ 310
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1
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783
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Comment: C: conceptual question about paired end sequencing
3.1 years ago by nhaus ▴ 310
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879
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Comment: C: biomaRt external_gene_name same entry multiple times when mapping to homolog mou
3.2 years ago by nhaus ▴ 310
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1.3k
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Comment: C: Duplicated genes in overrepresentation analysis (ORA)
3.3 years ago by nhaus ▴ 310
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1.3k
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Comment: C: Duplicated genes in overrepresentation analysis (ORA)
3.3 years ago by nhaus ▴ 310
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1
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992
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Comment: C: Count, LT, PH, PT Column in Functional Annotation Chart of DAVID
3.3 years ago by nhaus ▴ 310
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872
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Comment: C: GT 0/0 in VCF file
3.4 years ago by nhaus ▴ 310
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632
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Comment: C: Using StringTie with CAGE-seq data
3.7 years ago by nhaus ▴ 310
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1
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2.9k
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Comment: C: Questions about reference genome and alignment
3.7 years ago by nhaus ▴ 310
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1
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2.9k
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Comment: C: Questions about reference genome and alignment
3.7 years ago by nhaus ▴ 310
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2.3k
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Comment: C: Getting the db SNP VCF file for GRCh38.p13
3.9 years ago by nhaus ▴ 310
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998
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Comment: C: How to performe differential gene expression analysis for a single patient
4.0 years ago by nhaus ▴ 310
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1
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998
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Comment: C: How to performe differential gene expression analysis for a single patient
4.0 years ago by nhaus ▴ 310
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0
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2.1k
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Comment: C: Ensembl gene ID meaning of the underscore
4.0 years ago by nhaus ▴ 310
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1
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2.1k
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Comment: C: Ensembl gene ID meaning of the underscore
4.0 years ago by nhaus ▴ 310
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