User: hariprasadp.iitkgp

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Posts by hariprasadp.iitkgp

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Does result data after DESeq2 analysis contain normalised counts ?
... Hi, I have perdormed DGE analysis on a dataset using DESeq2. But when I compare the counts of genes in result data and the normalised counts (done using `normalized_counts <- counts(dds, normalized=TRUE)`) there is a lot difference in the counts. So which data do I need to use ? Should I take nor ...
R deseq2 normalisation rna-seq written 9 weeks ago by hariprasadp.iitkgp0 • updated 9 weeks ago by ATpoint36k
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Comment: C: DESeq2 on GEO dataset
... GSE3821_series_matrix ...
written 9 weeks ago by hariprasadp.iitkgp0
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DESeq2 on GEO dataset
... Hi, I am looking to perform Differential Gene expression analysis using R and GEO datasets. But I couldn't find the count matrices in the datasets, it is a raw data and need preprocessing. Can anyone help me how to use DESeq2 libary to preprocess the GEO dataset for Differential gene expression anal ...
geo R preprocessing deseq2 rna-seq written 9 weeks ago by hariprasadp.iitkgp0 • updated 10 days ago by Biostar ♦♦ 20

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