User: User 6777

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User 677710
Reputation:
10
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New User
Location:
United States
Last seen:
2 years, 1 month ago
Joined:
6 years, 1 month ago
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u********@gmail.com

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Posts by User 6777

<prev • 32 results • page 1 of 4 • next >
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How to generate this line diagram?
... Hi all, I want to generate a figure like that given below. This fig mainly shows amino acid range locations along the sequence length of a protein. [link of fig][1] The length of protein is given in file1.txt as: NP_123456.4: 110 In one file, centain range for that protein (file2.txt) ...
perl python R html written 2.2 years ago by User 677710 • updated 2.2 years ago by Ron870
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(Closed) Converting the following batch script to linux shell
... I am currently migrating to ubuntu from my windows system. Now I am learing to convert all my batch scripts into linux shell. Although the common commands are more or less similar, but I found it difficult for the following set of commands in windows cmd: setlocal :PROMPT SET /P AREYOUSURE=USE ...
shell cmd linux written 2.3 years ago by User 677710
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Comment: C: Determining length of numerical ranges in file by perl/awk
... this error: Can't find string terminator '"' anywhere before EOF at -e line 1. ...
written 2.3 years ago by User 677710
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Comment: C: Determining length of numerical ranges in file by perl/awk
... thanks for your answer ...
written 2.3 years ago by User 677710
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Comment: C: Determining length of numerical ranges in file by perl/awk
... aaaam.. currently i'm trying it sir.. but certainly i'm missing something ...
written 2.3 years ago by User 677710
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Comment: C: Determining length of numerical ranges in file by perl/awk
... sorry for my ignorance, is this a perl one liner? I'm on a windows machine and it shows error like: >perl -ane '$s = ""; Can't find string terminator "'" anywhere before EOF at -e line 1. C:\Users\cdutta\Desktop\x\New folder>foreach (@F) { /(\d+)-(\d+)/ and $2 - $1 >= 30 ...
written 2.3 years ago by User 677710
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Determining length of numerical ranges in file by perl/awk
... Hi all, I am now learning awk but get stuck on the following problem. I have a file (input.txt) with various numerical ranges (before it, there is an id and :) in each line such as: NP_416485.4: 4-5, 113-114, 395-399, 657-666, 671-675, 844-880, 889-889, 891-895, 963-966, 970-970, 991-992, ...
perl awk written 2.3 years ago by User 677710 • updated 2.3 years ago by Jorge Amigo11k
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Comment: C: Parsing complex file for extraction of number range
... Thanks khericlim, to start with, I have used python csv module as: import csv with open('test.txt','rb') as tsvin, open('new.csv', 'wb') as csvout: tsvin = csv.reader(tsvin, delimiter='\t') csvout = csv.writer(csvout) for row in tsvin: count = float(row[1]) ...
written 2.3 years ago by User 677710
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Parsing complex file for extraction of number range
... I have a large file with tab separated three data columns (and some repetitive header lines) as: Sequence ../Output/yy\Programs\NP_416485.4 alignment. Using default output format... # ../Output/Split_Seq/NP_416485.4.fasta - gap penalty: 1 - normalized: False # align_column_number scor ...
perl python written 2.3 years ago by User 677710 • updated 2.3 years ago by Eric Lim1.2k
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how to cluster sequences with uclust using multiple parameters
... Anyone has any idea on multiple accept options in uclust by combining them with AND, as detailed in their manual here: [usearch manual][1] I want to use a usearch command like: usearch -cluster_fast seq2.fasta -centroids seq.fasta -uc clusters.uc -id 0.8 AND ‑evalue 1e-10 AND ‑query_cov 0. ...
usearch next-gen uclust clustering written 2.4 years ago by User 677710

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Popular Question 2.6 years ago, created a question with more than 1,000 views. For Orthomcl Output File Processing
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Orthomcl Output File Processing

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