User: aliahmadvand2004

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Posts by aliahmadvand2004

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Java Equivalent Of Biopython'S Ncbixml Parser
... I'm looking for a method similar to Biopython's parse method of NCBIXML in java this is the parse method http://biopython.org/DIST/docs/api/Bio.Blast.NCBIXML-module.html#parse ...
biopython biojava java python xml blast parser written 6.1 years ago by aliahmadvand200450 • updated 6.1 years ago by David W4.7k
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Why There Are A Lot Of Bioinformatic Tools Implemented In Python?
... I know that Java programs work faster than python ones, so why there are a lot of programs written in python? is it because developing in python is faster or what? or because there are some available libraries for python which are not available for a language like java? I'm asking this because I'm ...
bioinformatics java tool python written 6.1 years ago by aliahmadvand200450 • updated 6.1 years ago by Leszek4.0k
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How Could I Run A Huge Number Of Blast Calls Faster?
... For the purpose of my project I need to break down a genome and run blast for each part. Because of the amount of genome file it would be at least 4000 call of blast which would take a lot of time. I'm using NCBIQBlastService to do my alignment remotely and as I checked for each request it would tak ...
genome ncbi blast written 6.3 years ago by aliahmadvand200450 • updated 5.0 years ago by qiyunzhu130
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I Use Blastdbcmd Command With Nr Database And It Gives Me The "Not Found Database" Error
... This is the error BLAST Database error: No alias or index file found for nucleotide database [nr] in search path [/home/aj3/Desktop/h/database::] what should I do? do I have to use any other commands prior to this one to make the database ready or what? ...
blast written 6.3 years ago by aliahmadvand200450 • updated 5.5 years ago by Biostar ♦♦ 20

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