User: sarahmcclymont

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Posts by sarahmcclymont

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Answer: A: create null sequences with gkmSVM for mouse genome mm10
... I hit this same problem and figured out that it's because the BSgenome.Mmusculus.UCSC.mm10.masked on Bioconductor (as of May 2020) only has two masks included (AGAPS and AMB), whereas previous genomes included the TRF mask as well, which is what gkmSVM is looking for. Thankfully, on GitHub, Zhang ...
written 5 months ago by sarahmcclymont20

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