User: statmushroom

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Posts by statmushroom

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Is it possible to get the results after TMM normalization in edgeR?
... I only get the normal factor with dge$samples; how can i get the exact values after the TMM normalization? ...
R rna-seq written 3 days ago by statmushroom0 • updated 3 days ago by Kevin Blighe59k
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Comment: C: The results (logFC) are not consistence (edgeR packages)
... * I DON'T know how to solve the problem, but I think I can clarify some points here. I think the OP assumes logFC = log(A/B) = log(test group/control group). So if the test group value is larger than the control group value, then it should result in log(some value > 1). Here, log(1) = 0. So if th ...
written 4 days ago by statmushroom0

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