User: ktm

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ktm0
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Posts by ktm

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How do I extract the p-value from runTest() in the TopGO package?
... I am testing a series of gene sets for GO-over-representation using the TopGO package. As algorithm I am using "weight01", statistic: fisher Once I have called runTest I generate the resultstable using the "GenTable()" function. The resulting table contains Go-terms, Term discription, number of anot ...
R topgo statistics written 3 months ago by ktm0
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DREME [MEME-suite] run locally results in empty output
... I have installed the MEME suite locally (bioconda, MEME 5.1.1, python=2.7) because I want to search for motifs in a number of sets of sequences automatically instead of uploading each manually to the website. When I run them though the output does not contain any motifs. When I compare the same set ...
dreme dna rna-seq motifs written 4 months ago by ktm0 • updated 8 weeks ago by Biostar ♦♦ 20

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