User: makrez

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makrez40
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40
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New User
Location:
Bern
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6 days, 11 hours ago
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1 week, 1 day ago
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m**************@gmail.com

Posts by makrez

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Comment: C: Versioning of Blast DB and Reproducible Research
... Great suggestion and thanks. This is indeed a very interesting answer and seems feasible to implement. I will seriously look into this and - in case there is some good progress - report back here. ...
written 8 days ago by makrez40
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Comment: C: Versioning of Blast DB and Reproducible Research
... I partly agree in the sense that the outcomes should not change dramatically, just because of the blast database release. However, from the computer science point of view, these analyses are deterministic and therefore they should be identical. I am also thinking about unit testing in larger pipelin ...
written 8 days ago by makrez40
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Comment: C: Versioning of Blast DB and Reproducible Research
... I was writing the post with regards to the `nt` database. ...
written 8 days ago by makrez40
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Forum: Versioning of Blast DB and Reproducible Research
... **Reproducible research** demands that we can rerun any analysis and get the same results. But how should we deal with this when analyses depend on databases that are frequently updated? We are currently facing the problem that we have implemented a daily automatic BLAST db update, but we would lik ...
database reproducible research forum blast written 8 days ago by makrez40 • updated 8 days ago by Mensur Dlakic5.4k

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