User: sankadinesh

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sankadinesh20
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3 months, 3 weeks ago
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Posts by sankadinesh

<prev • 11 results • page 1 of 2 • next >
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Comment: C: How to convert folder containing .fna.gz to normal files
... HI there, Thanks a lot, It worked. Dinesh ...
written 26 days ago by sankadinesh20
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Comment: C: How to convert folder containing .fna.gz to normal files
... HI there, Thanks. I would like to rename all files ending with .fna to .fasta. How to do that ? Regards, Dinesh ...
written 26 days ago by sankadinesh20
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Comment: C: How to arrange column one below another from side by side in a matrix?
... Your solution worked like charm. However the code starts to read from column 23 instead of 1. I have to cut and paste to get it in right order. Thanks a lot Dinesh ...
written 26 days ago by sankadinesh20
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How to convert folder containing .fna.gz to normal files
... How to convert .fna.gz files to .fna in a folder? I would also like to convert all .fna to .fasta. Thanks in advance ...
fasta sequencing written 26 days ago by sankadinesh20 • updated 26 days ago by zx87549.6k
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How to arrange column one below another from side by side in a matrix?
... I have a distance matrix file (Excel format) like this. I want to arrange columns to one below another from side by side. I have attached example file. I will apply your suggestions to larger dataset. https://drive.google.com/file/d/1Lyms3Vpe9mVwLuIqk50JaS3wh3tACN97/view?usp=sharing Please give yo ...
gene R sequence sequencing written 28 days ago by sankadinesh20 • updated 27 days ago by rpolicastro1.7k
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How to include samples names in assignTaxonomy of DADA2
... Dear All, I gave carried out assignTaxonomy for 3 samples using the following command. I would like to know how to include sample names to the resultant file. taxa <- assignTaxonomy(seqtab.nochim, "/Users/apple/Desktop/Databases/dada/dada.good.fasta", ...
gene R next-gen sequencing written 5 weeks ago by sankadinesh20 • updated 5 weeks ago by h.mon31k
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Comment: C: How to convert protein IDs to nucleotide acc id in eutilities ?
... Dear sir, Thanks for spending your valuable time. **First I tried like this,** Dinesh$ for i in 'cat /Users/apple/Desktop/testcopy.rtf' ; do printf ${i}"\t" ; esearch -db protein -query ${i} | elink -target nuccore | efetch -format acc; done catEntrez Direct does not support positional ...
written 6 weeks ago by sankadinesh20 • updated 6 weeks ago by genomax89k
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Comment: C: How to convert protein IDs to nucleotide acc id in eutilities ?
... Dear Sir, I figured out. This one is working epost -db protein -input /Users/apple/Desktop/test.rtf -format acc | elink -target nuccore | efetch -format acc AAA21838 AAA22008 AAA22014 AAA26329 AAA26332 AAA87251 AAA93020 AAA96262 AAB36876 AAB41123 ...
written 6 weeks ago by sankadinesh20 • updated 6 weeks ago by genomax89k
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Comment: A: How to convert protein IDs to nucleotide acc id in eutilities ?
... Dear sir, Thank you. Can you please suggest me how to convert list of protein IDs (10000 IDs) rather one ? Thanks once again Regards, Dinesh S L ...
written 6 weeks ago by sankadinesh20
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How to convert protein IDs to nucleotide acc id in eutilities ?
... I have a excel sheet with protein ID. I want to convert them to nucleotide id. How to do this using eutilies or any other method. Please reply. Thanks Regards, Dinesh ...
gene sequencing written 6 weeks ago by sankadinesh20

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