User: akshaykum684

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Posts by akshaykum684

<prev • 22 results • page 1 of 3 • next >
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Comment: C: bcftools merge - regex pattern and flag to choose?
... @Pierre Lindenbaum I got the below error message > Error: Duplicate sample names (S1), use --force-samples to > proceed anyway. Though the sample Ids/names might repeat across files, they are from different chromosome positions/different files and their data could be different as well. Am I ...
written 6 weeks ago by akshaykum6840
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Comment: C: bcftools merge - regex pattern and flag to choose?
... Hi @Pierre Lidenbaum -Thanks, I understood this ...
written 6 weeks ago by akshaykum6840
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Comment: C: Where can I find Annotation info for VCF files?
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written 6 weeks ago by akshaykum6840
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bcftools merge - regex pattern and flag to choose?
... Hello Everyone, I am new to bioinformatics and vcf files. I was following some tutorials online to generate `Variant_QC` measures such as call_Rate, n_het, etc for one file under ethnicity `Chinese`. Similarly, I have 100 VCF files under "Chinese" ethnicity. So, now to generate VARIANT_QC for ea ...
genome assembly sequence snp sequencing written 6 weeks ago by akshaykum6840
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Append/Merge/Combining multiple VCF files
... Hello Everyone, I have a list of VCF files from specific ethnicity such as American Indian, Chinese, European etc Under each ethnicity, I have around 100+ files. Currently, I computed the `VARIANT QC` metrics such as `call_rate`, `n_het` etc like below for one file [image is here][1] How can I ...
sequence next-gen chip-seq rna-seq sequencing written 6 weeks ago by akshaykum6840
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Comment: C: Where can I find Annotation info for VCF files?
... @JC - Now, I have a set of VCF files with me and would like to annotate them. May I know how can it be done? ...
written 7 weeks ago by akshaykum6840
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Comment: C: Where can I find Annotation info for VCF files?
... @JC - Thanks for the response. Upvoted. May I also check with you on the below q1) How can a publicly available annotation file/database be used to get more information about my subjects (which are present in our VCF file). What fields are used to link between my source VCF file and the external a ...
written 7 weeks ago by akshaykum6840
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Comment: A: Where can I find Annotation info for VCF files?
... removed the post ...
written 7 weeks ago by akshaykum6840

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