User: xinrantian

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xinrantian10
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Posts by xinrantian

<prev • 3 results • page 1 of 1 • next >
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How to calculate PhyloP score for only primates and rodents?
... Hey all, I'm trying to get phyloP values for several sequences but couldn't figure out how to only include primates and rodents genome. Could someone please help me with this? Thank you so much!! ...
genome conservation phylop written 7 months ago by xinrantian10
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Comment: C: Discrepancy between UCSC table browser PhyloP score and Bedmap mapped PhyloP sco
... Thank you for the answer! I used hg19 and 100 vertebrate phyloP for both methods and got different results. I got a response from UCSC genome browser team (quoted below) > The discrepancy you are noticing is due to the different coordinate systems that we use on the genome browser and file type ...
written 7 months ago by xinrantian10
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Discrepancy between UCSC table browser PhyloP score and Bedmap mapped PhyloP score
... Hey all, I was doing conservation analysis for some regions of interest and wanted to map PhyloP score onto the selected regions (in a .bed file). I got different results using different method. For example, for chr10: 91853138-91853143 If I just use UCSC Table Browser, I will get phyloP as desc ...
genome conservation analysis alignment bedmap ucsc written 7 months ago by xinrantian10 • updated 7 months ago by Alex Reynolds31k

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