User: askari.arezou94
askari.arezou94 • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- IRAN/AHVAZ
- Last seen:
- 10 hours ago
- Joined:
- 7 months, 2 weeks ago
- Email:
- a**************@yahoo.com
I am AREZOU
Ph.D. Student in the field of genetics.
my thesis title in M.A grade was "Identification and prediction Effects of SNPs on Protein structure with Insilico Methods"
Favorite fields: system biology, Pan-Genome analysis,RNA-Seq,
Posts by askari.arezou94
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... hello every one
when i input my transcriptome reads in fastqc, per base sequence content don't have same content across all bases,what i should be done? ...
written 22 hours ago by
askari.arezou94 • 30
• updated
22 hours ago by
GenoMax ♦ 94k
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Comment:
C: fastqc output analysis
... ok, I can find my responses in this comment. thank you ...
written 2 days ago by
askari.arezou94 • 30
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C: fastqc output analysis
... thank you so much for good comment. ...
written 2 days ago by
askari.arezou94 • 30
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... ![enter image description here][1]
[1]: ![https://ibb.co/866ZGYk][1]
what is your idea about this output? I should trim this? my data is transcriptome and the length of reads are 50
[1]: https://i.ibb.co/pJJFNhq/Capture.jpg ...
written 3 days ago by
askari.arezou94 • 30
• updated
3 days ago by
ATpoint ♦ 44k
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C: trimm data before analysis
... thank you. my data is transcriptomic data ...
written 8 days ago by
askari.arezou94 • 30
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Comment:
C: trimm data before analysis
... in fastqc results all of the outputs should be confirmed? if per base sequence content and GC Content ,sequence duplicate level and overrepresent content is not confirmed, what should i do? ...
written 8 days ago by
askari.arezou94 • 30
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Comment:
A: trimm data before analysis
... thank you so much for your response. ...
written 8 days ago by
askari.arezou94 • 30
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... hello every one
i have 25 raw data ,after quality control ,the quality of sequences was very high and don't have any adaptor, lenght of reads are 50 bp.
it is necessary using from trimmomatic before start to analysis data? ...
written 10 days ago by
askari.arezou94 • 30
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Comment:
C: Find depth of genome
... thank you for good comment. ...
written 25 days ago by
askari.arezou94 • 30
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... hello everyone
i have 14 whole genome, but i don't know anything about those coverage and sequencer platform's.
in the first step it is important for me find depth of sequences and in second step ,how can find sequence platform??
thank you ...
written 26 days ago by
askari.arezou94 • 30
• updated
25 days ago by
Mensur Dlakic • 8.1k
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