User: oolongoni

gravatar for oolongoni
oolongoni10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
5 months, 3 weeks ago
Joined:
7 years, 8 months ago
Email:
e******@gmail.com

about me

Posts by oolongoni

<prev • 5 results • page 1 of 1 • next >
0
votes
2
answers
6.3k
views
2
answers
Comment: C: Could not locate a HISAT2 index to basename
... Thanks for your input! I can try changing the index directory name from `/share/projects/RNASeq/data/reference/GRCh38/grch38_tran/` to `/share/projects/RNASeq/data/reference/GRCh38/genome_tran` after the job is finished running. ...
written 3.4 years ago by oolongoni10
0
votes
2
answers
6.3k
views
2
answers
Comment: C: Could not locate a HISAT2 index to basename
... Thank you sir! I guess it makes sense now. I wonder why renaming the `*ht2` index files did not work. ...
written 3.4 years ago by oolongoni10
3
votes
2
answers
6.3k
views
6 follow
2
answers
Could not locate a HISAT2 index to basename
... First time trying out HISAT2 and I'm having a problem here, even with the pre-made indices for GRCH38. $ hisat2 -x /share/projects/RNASeq/data/reference/GRCh38/grch38_tran -1 /home/echang/PANCANCER-030817-JE3-35880845/KTP-10-43736695/KTP-10_S3_L001_R1_001.fastq.gz -2 /home/echang/PANCANCER-0308 ...
rna-seq hisat2 written 3.4 years ago by oolongoni10 • updated 18 months ago by zhiminfdu0
0
votes
2
answers
2.5k
views
2
answers
Answer: A: How to use Brainarray CDF for gcrma?
... Solved it! It was erroneously naming the cdfname. Doh! raw.data = ReadAffy(verbose=TRUE, filenames=cels, cdfname="u133aaofav2hsentrezg") ## not "u133aaofav2hsentrezgcdf" ...
written 3.9 years ago by oolongoni10
1
vote
2
answers
2.5k
views
2
answers
How to use Brainarray CDF for gcrma?
... Hello, I am trying to analyze the GSE24759 dataset using the raw CEL files. I was hoping to use gcrma to process the data but ran into complications downloading the custom CDF "U133AAofAv2_Hs_ENTREZG" from Brainarray. http://brainarray.mbni.med.umich.edu/bioc/ I found a tutorial here (https://githu ...
u133aaofav2 gcrma cdf written 3.9 years ago by oolongoni10 • updated 2.8 years ago by sinnamone0

Latest awards to oolongoni

Great Question 9 months ago, created a question with more than 5,000 views. For Could not locate a HISAT2 index to basename
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Could not locate a HISAT2 index to basename
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Could not locate a HISAT2 index to basename
Voter 4.8 years ago, voted more than 100 times.
Supporter 6.4 years ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1053 users visited in the last hour