User: elbakri.fatimazahrae

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Posts by elbakri.fatimazahrae

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Comment: A: How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
... I was running the generatemap.pl CMd : util/mappability/generateMap.pl -w 35 -i /Users/mac/Desktop/NGS-/TriTrypDB-47_LmajorLV39c5_Genome.fasta > /Users/mac/Desktop/NGS-/TriTrypDB-47_LmajorLV39c5_Genome-map.bigwig but I get un error : Can't exec "bowtie": Not a directory at util/mappability/gen ...
written 4 weeks ago by elbakri.fatimazahrae0
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Comment: A: How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
... the error is src/util/mappability/internal/fastaToRead missing, try recompiling..., getting after the following CMD rc/util/mappability/generateMap.pl -w 35 -i /Users/mac/Desktop/NGS-/TriTrypDB-47_LmajorLV39c5_Genome.fasta > /Users/mac/Desktop/NGS-/TriTrypDB-47_LmajorLV39c5_Genome-map.big ...
written 5 weeks ago by elbakri.fatimazahrae0 • updated 5 weeks ago by ATpoint42k
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Comment: A: How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
... I get the same error, I reinstalled and recompiling but still have the same error how should I fix it ?! ...
written 5 weeks ago by elbakri.fatimazahrae0
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Comment: C: Error : Could not build fai index
... the command is samtools faidx /Volumes/DATASETS/LmjFwholegenome_20070731_V5.2.fasta ...
written 5 months ago by elbakri.fatimazahrae0 • updated 5 months ago by _r_am31k
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Comment: A: Error : Could not build fai index
... I used this command : bwa index -a bwtsw /Volumes/DATASETS/LmjFwholegenome_20070731_V5.2.fasta I got this : [bwa_index] Pack FASTA... [bns_fasta2bntseq] fail to open file '/Volumes/DATASETS/LmjFwholegenome_20070731_V5.2.fasta.pac' : Read-only file system (base) Air-de-mac:~ mac$ bwa ...
written 5 months ago by elbakri.fatimazahrae0 • updated 5 months ago by genomax92k
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create index ref
... I entry bwa index -a bwtsw /Volumes/major/DATASETS/LmjFwholegenome_20070731_V5.2.fasta and then I have [bwa_index] Pack FASTA... [bns_fasta2bntseq] fail to open file '/Volumes/major/DATASETS/LmjFwholegenome_20070731_V5.2.fasta.pac' : Read-only file system ...
alignment written 5 months ago by elbakri.fatimazahrae0 • updated 5 months ago by lieven.sterck9.0k

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