Moderator: Emily_Ensembl
Emily_Ensembl ♦ 19k
- Reputation:
- 19,280
- Status:
- Trusted
- Location:
- EMBL-EBI
- Website:
- http://www.ensembl.org...
- Twitter:
- @Ensemily
- Last seen:
- 7 minutes ago
- Joined:
- 6 years, 9 months ago
- Email:
- e****@ebi.ac.uk
Outreach Project Leader for Ensembl. I can help you with anything Ensembl-related (or find someone who can).
(she/her/hers)
Posts by Emily_Ensembl
<prev
• 1,281 results •
page 1 of 129 •
next >
0
votes
2
answers
22
views
2
answers
... Run them through the [Ensembl VEP](http://www.ensembl.org/info/docs/tools/vep/index.html). You'll get the genes plus a bunch of other information about how the variants affect the genes. ...
written 22 minutes ago by
Emily_Ensembl ♦ 19k
1
vote
1
answer
47
views
1
answers
... The easiest way is the [Ensembl REST API](http://rest.ensembl.org/documentation), which allows language agnostic access to Ensembl data. There's an [online course](https://www.ebi.ac.uk/training/online/course/ensembl-rest-api) on using the API in Python, R or Perl. ...
written 1 day ago by
Emily_Ensembl ♦ 19k
1
vote
2
answers
678
views
2
answers
Comment:
C: Querying VEP using REST API
... You can make json in R using a library called [jsonlite](https://cran.r-project.org/web/packages/jsonlite/). Assuming that you have a list of values in a vector called snps, as in the above example, you could use:
data <- toJSON(list(ids=snps))
There is a full [online course using Jupter no ...
written 1 day ago by
Emily_Ensembl ♦ 19k
0
votes
0
answers
82
views
0
answers
Comment:
C: Understanding the annotation tag
... > The annotation file was downloaded as a bed file from UCSC table browser.
Table browser is not just a tool where you click once and it magically gives you data. You have to choose what you want to download. Without knowing what you downloaded, we have no idea what it means. So what did you dow ...
written 2 days ago by
Emily_Ensembl ♦ 19k
0
votes
0
answers
82
views
0
answers
Comment:
C: Understanding the annotation tag
... Annotation of what? What did you query? ...
written 5 days ago by
Emily_Ensembl ♦ 19k
0
votes
2
answers
74
views
2
answers
... Everything back at full functionality now ...
written 7 days ago by
Emily_Ensembl ♦ 19k
0
votes
2
answers
74
views
2
answers
... Adding an answer to boost this post. This is just two hours away. If you have pipelines that rely on any of these services, you may wish to put a pause on them. ...
written 7 days ago by
Emily_Ensembl ♦ 19k
0
votes
1
answer
2.5k
views
1
answers
... Are you getting no annotation for those probes? Or are you just losing one of the two annotations you got previously? ...
written 12 days ago by
Emily_Ensembl ♦ 19k
0
votes
2
answers
74
views
2
answers
... On the 13th of November between 10:30-11:30 am (GMT) the following Ensembl services will have reduced functionality.
* ensembl.org
* plants.ensembl.org
* metazoa.ensembl.org
* fungi.ensembl.org
* protists.ensembl.org
* bacteria.ensembl.org
* Ensembl mirrors
* trackhubregistry.org
If you access Ens ...
written 12 days ago by
Emily_Ensembl ♦ 19k
3
votes
1
answer
2.5k
views
1
answers
... [ENSG00000261911](http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000261911;r=HG1257_PATCH:73696456-73719401) was a patch gene on GRCh37. That means there was a repair added to cover over an error in the reference genome GRCh37, and genes were annotated on the repaired sequence as well a ...
written 14 days ago by
Emily_Ensembl ♦ 19k
Latest awards to Emily_Ensembl
Popular Question
20 hours ago,
created a question with more than 1,000 views.
For Ensembl file formatting tool: tell us what you need
Commentator
14 days ago,
created a comment with at least 3 up-votes.
For C: Help obtaining splice site data from dbSNP!
Scholar
22 days ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Scholar
4 weeks ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Scholar
5 weeks ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Teacher
5 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar
5 weeks ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Teacher
6 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar
6 weeks ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Commentator
7 weeks ago,
created a comment with at least 3 up-votes.
For C: Help obtaining splice site data from dbSNP!
Good Answer
7 weeks ago,
created an answer that was upvoted at least 5 times.
For A: Venter Genome Vcf
Popular Question
8 weeks ago,
created a question with more than 1,000 views.
For Ensembl file formatting tool: tell us what you need
Good Answer
8 weeks ago,
created an answer that was upvoted at least 5 times.
For A: what is the biological meaning of chromosome cytoband except centromere?
Teacher
8 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar
8 weeks ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Teacher
9 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Commentator
10 weeks ago,
created a comment with at least 3 up-votes.
For C: Help obtaining splice site data from dbSNP!
Teacher
10 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher
11 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar
11 weeks ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Scholar
11 weeks ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2243 users visited in the last hour