Moderator: Emily_Ensembl
Emily_Ensembl ♦ 17k
- Reputation:
- 17,110
- Status:
- Trusted
- Location:
- EMBL-EBI
- Website:
- http://www.ensembl.org...
- Twitter:
- @Ensemily
- Last seen:
- 4 days, 23 hours ago
- Joined:
- 6 years, 1 month ago
- Email:
- e****@ebi.ac.uk
Outreach Project Leader for Ensembl. I can help you with anything Ensembl-related (or find someone who can).
Posts by Emily_Ensembl
<prev
• 1,125 results •
page 1 of 113 •
next >
1
vote
1
answer
166
views
1
answers
Comment:
C: extracting gene names
... No, I have no obligation to provide you with a solution to your problem. I have provided you with a link to the documentation for an API which I know does something similar to what you're asking. It is your responsibility to read that documentation and work out how to do it. If you get stuck, then y ...
written 10 days ago by
Emily_Ensembl ♦ 17k
• updated
3 days ago by
zx8754 ♦ 6.7k
1
vote
1
answer
166
views
1
answers
Answer:
A: extracting gene names
... Have you looked at the [EuropePMC REST API](https://europepmc.org/AnnotationsApi#!/annotations45api45controller/getAnnotationsArticlesByIdsUsingGET)? ...
written 10 days ago by
Emily_Ensembl ♦ 17k
3
votes
1
answer
93
views
1
answers
... These IDs are not in the files because the files map between Ensembl identifiers and other databases. These IDs have no match in these databases. ...
written 12 days ago by
Emily_Ensembl ♦ 17k
1
vote
0
answers
125
views
0
answers
... In VCF indels should be represented like GA A for deletions or G GA for insertions. If you do not have this representation in your VCF then it is not correct VCF. You need to send this back to the source and ask for the correct version. ...
written 13 days ago by
Emily_Ensembl ♦ 17k
0
votes
0
answers
125
views
0
answers
... Can you show us a sample of your VCF? The information should be in there. If not, it's not VCF and you need to send it back to whoever made it for you. ...
written 14 days ago by
Emily_Ensembl ♦ 17k
0
votes
0
answers
125
views
0
answers
... Do you have rsIDs of the variants? ...
written 14 days ago by
Emily_Ensembl ♦ 17k
4
votes
1
answer
99
views
1
answers
... The difference is the three exons:
- ENSE00001146308, Exon 1, NA (BioMart) / 7590695 - 7590856 (GTF)
- ENSE00002667911, Exon 2, 7579839 - 7579912 (BioMart) / 7579839 - 7579940 (GTF)
- ENSE00003605891, Exon 11, 7572927 - 7573008 (BioMart) / 7571720 - 7573008 (GTF)
With BioMart, you're getting ...
written 17 days ago by
Emily_Ensembl ♦ 17k
0
votes
0
answers
104
views
0
answers
Comment:
C: reducing coverage of a vcf file
... Why do you want to do this? ...
written 17 days ago by
Emily_Ensembl ♦ 17k
0
votes
0
answers
121
views
0
answers
... If you've used cpan then Perl should just know where it is. If you install manually, you'll need to add it to your PERL5LIB ...
written 18 days ago by
Emily_Ensembl ♦ 17k
0
votes
0
answers
121
views
0
answers
... How did you install Bio::DB::HTS? Does the VEP know how to find it? ...
written 18 days ago by
Emily_Ensembl ♦ 17k
Latest awards to Emily_Ensembl
Scholar
9 days ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Scholar
11 days ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Teacher
12 days ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar
12 days ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Appreciated
12 days ago,
created a post with more than 5 votes.
For C: How to write well in science, specially in bioinformatics ?
Teacher
14 days ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar
14 days ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Teacher
20 days ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Commentator
27 days ago,
created a comment with at least 3 up-votes.
For C: How to write well in science, specially in bioinformatics ?
Teacher
4 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher
5 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher
5 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Good Answer
6 weeks ago,
created an answer that was upvoted at least 5 times.
For A: Asking The Developers Before Asking Biostars
Appreciated
6 weeks ago,
created a post with more than 5 votes.
For C: How to write well in science, specially in bioinformatics ?
Teacher
6 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher
7 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Commentator
7 weeks ago,
created a comment with at least 3 up-votes.
For C: Help obtaining splice site data from dbSNP!
Commentator
7 weeks ago,
created a comment with at least 3 up-votes.
For C: How to write well in science, specially in bioinformatics ?
Teacher
9 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar
9 weeks ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Teacher
9 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher
10 weeks ago,
created an answer with at least 3 up-votes.
For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Commentator
12 weeks ago,
created a comment with at least 3 up-votes.
For C: How to write well in science, specially in bioinformatics ?
Appreciated
12 weeks ago,
created a post with more than 5 votes.
For C: How to write well in science, specially in bioinformatics ?
Scholar
3 months ago,
created an answer that has been accepted.
For A: (Where) can I download the Ensembl cross reference database?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2480 users visited in the last hour