Moderator: Emily_Ensembl

gravatar for Emily_Ensembl
Emily_Ensembl17k
Reputation:
17,110
Status:
Trusted
Location:
EMBL-EBI
Website:
http://www.ensembl.org...
Twitter:
@Ensemily
Last seen:
4 days, 23 hours ago
Joined:
6 years, 1 month ago
Email:
e****@ebi.ac.uk

Outreach Project Leader for Ensembl. I can help you with anything Ensembl-related (or find someone who can).

Posts by Emily_Ensembl

<prev • 1,125 results • page 1 of 113 • next >
1
vote
1
answer
166
views
1
answers
Comment: C: extracting gene names
... No, I have no obligation to provide you with a solution to your problem. I have provided you with a link to the documentation for an API which I know does something similar to what you're asking. It is your responsibility to read that documentation and work out how to do it. If you get stuck, then y ...
written 10 days ago by Emily_Ensembl17k • updated 3 days ago by zx87546.7k
1
vote
1
answer
166
views
1
answers
Answer: A: extracting gene names
... Have you looked at the [EuropePMC REST API](https://europepmc.org/AnnotationsApi#!/annotations45api45controller/getAnnotationsArticlesByIdsUsingGET)? ...
written 10 days ago by Emily_Ensembl17k
3
votes
1
answer
93
views
1
answers
Answer: A: Ensembl ID found on the site but not in downloaded flat file
... These IDs are not in the files because the files map between Ensembl identifiers and other databases. These IDs have no match in these databases. ...
written 12 days ago by Emily_Ensembl17k
1
vote
0
answers
125
views
0
answers
Comment: C: Post-GWAS: Determining whether SNPs represent an indel, given only SNPs
... In VCF indels should be represented like GA A for deletions or G GA for insertions. If you do not have this representation in your VCF then it is not correct VCF. You need to send this back to the source and ask for the correct version. ...
written 13 days ago by Emily_Ensembl17k
0
votes
0
answers
125
views
0
answers
Comment: C: Post-GWAS: Determining whether SNPs represent an indel, given only SNPs
... Can you show us a sample of your VCF? The information should be in there. If not, it's not VCF and you need to send it back to whoever made it for you. ...
written 14 days ago by Emily_Ensembl17k
0
votes
0
answers
125
views
0
answers
Comment: C: Post-GWAS: Determining whether SNPs represent an indel, given only SNPs
... Do you have rsIDs of the variants? ...
written 14 days ago by Emily_Ensembl17k
4
votes
1
answer
99
views
1
answers
Answer: A: Different results from biomaRt query and search in GTF
... The difference is the three exons: - ENSE00001146308, Exon 1, NA (BioMart) / 7590695 - 7590856 (GTF) - ENSE00002667911, Exon 2, 7579839 - 7579912 (BioMart) / 7579839 - 7579940 (GTF) - ENSE00003605891, Exon 11, 7572927 - 7573008 (BioMart) / 7571720 - 7573008 (GTF) With BioMart, you're getting ...
written 17 days ago by Emily_Ensembl17k
0
votes
0
answers
104
views
0
answers
Comment: C: reducing coverage of a vcf file
... Why do you want to do this? ...
written 17 days ago by Emily_Ensembl17k
0
votes
0
answers
121
views
0
answers
Comment: C: Bio-DB-HTS installation and ensembl-vep
... If you've used cpan then Perl should just know where it is. If you install manually, you'll need to add it to your PERL5LIB ...
written 18 days ago by Emily_Ensembl17k
0
votes
0
answers
121
views
0
answers
Comment: A: Bio-DB-HTS installation and ensembl-vep
... How did you install Bio::DB::HTS? Does the VEP know how to find it? ...
written 18 days ago by Emily_Ensembl17k

Latest awards to Emily_Ensembl

Scholar 9 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Scholar 11 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 12 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 12 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Appreciated 12 days ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Teacher 14 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 14 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 20 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Commentator 27 days ago, created a comment with at least 3 up-votes. For C: How to write well in science, specially in bioinformatics ?
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Good Answer 6 weeks ago, created an answer that was upvoted at least 5 times. For A: Asking The Developers Before Asking Biostars
Appreciated 6 weeks ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Commentator 7 weeks ago, created a comment with at least 3 up-votes. For C: Help obtaining splice site data from dbSNP!
Commentator 7 weeks ago, created a comment with at least 3 up-votes. For C: How to write well in science, specially in bioinformatics ?
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 9 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Commentator 12 weeks ago, created a comment with at least 3 up-votes. For C: How to write well in science, specially in bioinformatics ?
Appreciated 12 weeks ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Scholar 3 months ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2480 users visited in the last hour