Moderator: Emily_Ensembl

gravatar for Emily_Ensembl
Emily_Ensembl19k
Reputation:
19,280
Status:
Trusted
Location:
EMBL-EBI
Website:
http://www.ensembl.org...
Twitter:
@Ensemily
Last seen:
7 minutes ago
Joined:
6 years, 9 months ago
Email:
e****@ebi.ac.uk

Outreach Project Leader for Ensembl. I can help you with anything Ensembl-related (or find someone who can).

(she/her/hers)

Posts by Emily_Ensembl

<prev • 1,281 results • page 1 of 129 • next >
0
votes
2
answers
22
views
2
answers
Answer: A: How to get gene name for SNPs RS ids
... Run them through the [Ensembl VEP](http://www.ensembl.org/info/docs/tools/vep/index.html). You'll get the genes plus a bunch of other information about how the variants affect the genes. ...
written 22 minutes ago by Emily_Ensembl19k
1
vote
1
answer
47
views
1
answers
Answer: A: ensemble transcript ID to gene symbol using pybiomart
... The easiest way is the [Ensembl REST API](http://rest.ensembl.org/documentation), which allows language agnostic access to Ensembl data. There's an [online course](https://www.ebi.ac.uk/training/online/course/ensembl-rest-api) on using the API in Python, R or Perl. ...
written 1 day ago by Emily_Ensembl19k
1
vote
2
answers
678
views
2
answers
Comment: C: Querying VEP using REST API
... You can make json in R using a library called [jsonlite](https://cran.r-project.org/web/packages/jsonlite/). Assuming that you have a list of values in a vector called snps, as in the above example, you could use: data <- toJSON(list(ids=snps)) There is a full [online course using Jupter no ...
written 1 day ago by Emily_Ensembl19k
0
votes
0
answers
82
views
0
answers
Comment: C: Understanding the annotation tag
... > The annotation file was downloaded as a bed file from UCSC table browser. Table browser is not just a tool where you click once and it magically gives you data. You have to choose what you want to download. Without knowing what you downloaded, we have no idea what it means. So what did you dow ...
written 2 days ago by Emily_Ensembl19k
0
votes
0
answers
82
views
0
answers
Comment: C: Understanding the annotation tag
... Annotation of what? What did you query? ...
written 5 days ago by Emily_Ensembl19k
0
votes
2
answers
74
views
2
answers
Answer: A: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
... Everything back at full functionality now ...
written 7 days ago by Emily_Ensembl19k
0
votes
2
answers
74
views
2
answers
Answer: A: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
... Adding an answer to boost this post. This is just two hours away. If you have pipelines that rely on any of these services, you may wish to put a pause on them. ...
written 7 days ago by Emily_Ensembl19k
0
votes
1
answer
2.5k
views
1
answers
Comment: C: Annotate Affymetrix probesets to Gene symbols
... Are you getting no annotation for those probes? Or are you just losing one of the two annotations you got previously? ...
written 12 days ago by Emily_Ensembl19k
0
votes
2
answers
74
views
2
answers
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
... On the 13th of November between 10:30-11:30 am (GMT) the following Ensembl services will have reduced functionality. * ensembl.org * plants.ensembl.org * metazoa.ensembl.org * fungi.ensembl.org * protists.ensembl.org * bacteria.ensembl.org * Ensembl mirrors * trackhubregistry.org If you access Ens ...
downtime ensembl news written 12 days ago by Emily_Ensembl19k
3
votes
1
answer
2.5k
views
1
answers
Comment: C: Annotate Affymetrix probesets to Gene symbols
... [ENSG00000261911](http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000261911;r=HG1257_PATCH:73696456-73719401) was a patch gene on GRCh37. That means there was a repair added to cover over an error in the reference genome GRCh37, and genes were annotated on the repaired sequence as well a ...
written 14 days ago by Emily_Ensembl19k

Latest awards to Emily_Ensembl

Popular Question 20 hours ago, created a question with more than 1,000 views. For Ensembl file formatting tool: tell us what you need
Prophet 1 day ago, created a post with more than 20 followers. For How to apply for a job
Commentator 14 days ago, created a comment with at least 3 up-votes. For C: Help obtaining splice site data from dbSNP!
Scholar 22 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Scholar 4 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Scholar 5 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 5 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Appreciated 6 weeks ago, created a post with more than 5 votes. For A: Venter Genome Vcf
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 6 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Commentator 7 weeks ago, created a comment with at least 3 up-votes. For C: Help obtaining splice site data from dbSNP!
Good Answer 7 weeks ago, created an answer that was upvoted at least 5 times. For A: Venter Genome Vcf
Appreciated 7 weeks ago, created a post with more than 5 votes. For A: Venter Genome Vcf
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Ensembl file formatting tool: tell us what you need
Good Answer 8 weeks ago, created an answer that was upvoted at least 5 times. For A: what is the biological meaning of chromosome cytoband except centromere?
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 8 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Commentator 10 weeks ago, created a comment with at least 3 up-votes. For C: Help obtaining splice site data from dbSNP!
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 11 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Scholar 11 weeks ago, created an answer that has been accepted. For A: misc_RNA in Ensembl
Scholar 11 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2243 users visited in the last hour