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Moderator: Emily_Ensembl

gravatar for Emily_Ensembl
Emily_Ensembl ♦ 16k
Reputation:
15,870
Status:
Trusted
Location:
EMBL-EBI
Website:
http://www.ensembl.org...
Twitter:
@Ensemily
Last seen:
43 minutes ago
Joined:
5 years, 9 months ago
Email:
e***********@gmail.com

Outreach Project Leader for Ensembl. I can help you with anything Ensembl-related (or find someone who can).

Posts by Emily_Ensembl

<prev • 1,054 results • page 1 of 106 • next >
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Answer: A: Most efficient strategy to convert from Ensembl protein IDs (ENSP) to Entrez Gen
... It's very easy using BioMart. You just filter by the list of ENSPs and get the NCBI gene IDs as output (note, they used to be called Entrez Gene IDs, they're now called NCBI gene IDs). ...
written 8 hours ago by Emily_Ensembl ♦ 16k
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Comment: C: Python Data Visualization Course. Last 3 spots left
... My personal preference would be for things like this ("3 spots left") to be a boost on the original advertising post, rather than a new post (you can just reply to an existing post to boost it). ...
written 8 hours ago by Emily_Ensembl ♦ 16k
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Comment: C: Difference between various GRCH 37 releases?
... The three repeats are still there in the primary assembly. There's just a different version that you can (and should) instead for that locus which has four repeats. ...
written 3 days ago by Emily_Ensembl ♦ 16k
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Answer: A: Get Rs Number Based On Chromosome and Position
... Run your variants through the [Ensembl VEP](http://www.ensembl.org/info/docs/tools/vep/index.html). This will give you the known rsID if there is one, plus information about which genes were hit and the effect on those genes. ...
written 4 days ago by Emily_Ensembl ♦ 16k
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Answer: A: Overlapped Variations Detecting
... You can use [vcf tools](http://vcftools.sourceforge.net/man_0112b.html#COMPARISON%20OPTIONS) for this. ...
written 4 days ago by Emily_Ensembl ♦ 16k
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Comment: C: Ensembl ID conversion - other than Uniprot
... Mapping between databases is not always 1:1, as they have different philosophies of annotation. In the case of [ENSG00000179388](http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000179388;r=8:22687659-22693302), different transcripts of the gene map to different UniProt identifiers. ...
written 5 days ago by Emily_Ensembl ♦ 16k
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Comment: C: HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calcula
... There is now a much more informative error message. ...
written 13 days ago by Emily_Ensembl ♦ 16k
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Job: Job: Ensembl Bioinformatician - comparative genomics
... We’re looking for a bioinformatician to join our comparative genomics team working on gene trees and homology and whole genome alignments. We’re looking for PhDs or MScs in molecular biology or bioinformaics, with experience in Perl or Python, relational databases and Unix. Closes 7th December. [Ap ...
alignments ensembl homology job gene tree written 13 days ago by Emily_Ensembl ♦ 16k
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Job: Ensembl Regulation Project Leader, Cambridge, UK
... We’re looking for a developer/manager to lead our efforts to annotate the genome with features that regulate gene expression, working with data from large scale epigenomics projects. We’re looking for PhDs in molecular biology, bioinformatics or genomics with experience in gene regulation and high-p ...
ensembl gene expression epigenomics job written 13 days ago by Emily_Ensembl ♦ 16k • updated 13 days ago by genomax ♦ 58k
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Comment: C: Is the Ensembl.org website down today 11/3/2018
... Which is why, whenever I'm writing for an international audience, I use words rather than numbers. Less confusing that way. ...
written 14 days ago by Emily_Ensembl ♦ 16k

Latest awards to Emily_Ensembl

Teacher 26 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 26 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Scholar 4 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For ENCODE Users' Meeting
Appreciated 5 weeks ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Appreciated 5 weeks ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 8 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Good Answer 9 weeks ago, created an answer that was upvoted at least 5 times. For A: Venter Genome Vcf
Oracle 9 weeks ago, created more than 1,000 posts (questions + answers + comments).
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Appreciated 10 weeks ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Popular Question 3 months ago, created a question with more than 1,000 views. For ENCODE Users' Meeting
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Appreciated 3 months ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: Venter Genome Vcf
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 3 months ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 4 months ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 4 months ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
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