Moderator: Emily_Ensembl

gravatar for Emily_Ensembl
Emily_Ensembl15k
Reputation:
14,950
Status:
Trusted
Location:
EMBL-EBI
Website:
http://www.ensembl.org...
Twitter:
@Ensemily
Last seen:
1 day, 17 hours ago
Joined:
5 years, 5 months ago
Email:
e***********@gmail.com

Outreach Project Leader for Ensembl. I can help you with anything Ensembl-related (or find someone who can).

Posts by Emily_Ensembl

<prev • 974 results • page 1 of 98 • next >
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Answer: A: Any recommended software for SNP calling? from fasta sequences
... 1. Align FASTQ to genome reference to get BAM files. 2. Perform SNP calling on BAM files. ...
written 1 day ago by Emily_Ensembl15k
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Answer: A: Retrieving sequences from Ensembl Archive
... BioMart is gene-centric, it cannot get sequences of genomic regions. The easiest way to get what you need is using the REST API archive with the [POST sequence/region][1] endpoint. This will allow you to retrieve multiple sequences, and you can code around it in any language. [1]: http://may2017 ...
written 1 day ago by Emily_Ensembl15k
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Comment: C: Why a gene name have more than one ensembl ID in gtf?
... If you have a list you would like us to investigate, please send it in to helpdesk [at] ensembl.org. ...
written 1 day ago by Emily_Ensembl15k
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Answer: A: Why a gene name have more than one ensembl ID in gtf?
... Looks like ENSG00000285053 is a readthrough of ENSG00000284770 and GGPS1 ENSG00000152904: http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000285053;r=1:235328570-235448952 Readthroughs are annoying because we need RefSeq to agree they exist before HGNC can give them a meaningful n ...
written 2 days ago by Emily_Ensembl15k
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Comment: C: Location of intronic SNPs from exons
... [HGVS documentation](https://varnomen.hgvs.org/) ...
written 3 days ago by Emily_Ensembl15k
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Answer: A: How to determine a single copy gene ?
... [BioMart query](http://www.ensembl.org/biomart/martview/ca6712436b6fd722654d3581bbe5a8e3?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id|hsapiens_gene_ensembl.default.feature_page.ensembl_transcript_id&FILTERS=hsapiens_gene_ensembl.default.filt ...
written 3 days ago by Emily_Ensembl15k
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Comment: C: How to retrieve gene annotation "HGVS cDNA" (e.g. c.158G>A) by chromosome positi
... Yes, you can [install a local cache of the VEP data and run it from the command line](http://grch37.ensembl.org/info/docs/tools/vep/index.html). ...
written 4 days ago by Emily_Ensembl15k
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Answer: A: How accurate it is for the genome project like goat or dog?
... The quality of the genome can be assessed by things like the coverage and N50. The higher the numbers of both the better. Predicted genes are often annotated by mapping genes from other species onto the genome. We assume that the location identified is the orthologue of the original gene. ...
written 4 days ago by Emily_Ensembl15k
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Comment: C: Finding NEW Somatic Cancer Mutation Databases
... And they continue to be updated. ...
written 5 days ago by Emily_Ensembl15k
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Answer: A: featureCount vs GENCODE gene lengths
... 1. It's an [antisense gene to Titin](http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000237298;r=2:178521183-178779963). It's a whopper. As an antisense gene, it, of course, shares exonic regions (though on the opposite strand) with Titin (ENSG00000155657), the gene it is antisense to becau ...
written 5 days ago by Emily_Ensembl15k

Latest awards to Emily_Ensembl

Teacher 1 day ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 2 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 4 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 4 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 10 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 10 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Scholar 10 days ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 11 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Popular Question 19 days ago, created a question with more than 1,000 views. For ENCODE Users' Meeting
Appreciated 4 weeks ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Commentator 4 weeks ago, created a comment with at least 3 up-votes. For C: How to write well in science, specially in bioinformatics ?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 6 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Good Answer 7 weeks ago, created an answer that was upvoted at least 5 times. For A: Venter Genome Vcf
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Appreciated 7 weeks ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: (Where) can I download the Ensembl cross reference database?
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Popular Question 11 weeks ago, created a question with more than 1,000 views. For ENCODE Users' Meeting
Appreciated 11 weeks ago, created a post with more than 5 votes. For C: How to write well in science, specially in bioinformatics ?
Commentator 11 weeks ago, created a comment with at least 3 up-votes. For C: How to write well in science, specially in bioinformatics ?
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Good Answer 11 weeks ago, created an answer that was upvoted at least 5 times. For A: Venter Genome Vcf

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