Moderator: Emily_Ensembl

gravatar for Emily_Ensembl
Emily_Ensembl21k
Reputation:
20,960
Status:
Trusted
Location:
EMBL-EBI
Website:
http://www.ensembl.org...
Twitter:
@Ensemily
Last seen:
8 minutes ago
Joined:
7 years, 11 months ago
Email:
e****@ebi.ac.uk

Outreach Project Leader for Ensembl. I can help you with anything Ensembl-related (or find someone who can).

(she/her/hers)

Posts by Emily_Ensembl

<prev • 1,354 results • page 1 of 136 • next >
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Answer: A: Does VEP use alternative splicing in their calculations?
... The VEP considers all transcripts annotated by Ensembl. ...
written 5 days ago by Emily_Ensembl21k
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Answer: A: How to how "Gene Legend", "Regulation Legend" & "Human cDNAs" for a DNA sequence
... Click on "Configure this page" then add all the tracks and legends you want to see. ...
written 29 days ago by Emily_Ensembl21k
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Answer: A: VEP coordinates do not result to same sequence as ref sequence in gsvar file
... This is down to a particular quirk of HGVS in right shifting any deletions/insertions which have the same outcome. The location in the CDS of your input deletion region is 607-613, whereas the HGVS shows it to be 612-618. The sequence of this region is: 607 - TGCTGCGTGCTGA - 619 C C ...
written 5 weeks ago by Emily_Ensembl21k
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Answer: A: Is there any update about adding more reference genomes of plant species on Ense
... We have it on our list of genomes to add but we're waiting for the latest 2020 version to be given a GCA accession by the INSDC, as this is a [requirement for us](http://www.ensembl.org/info/about/legal/browser_agreement.html). If you want to annotate your variants, you can still do so using the [E ...
written 6 weeks ago by Emily_Ensembl21k
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Comment: C: How to annotate Missing Positions
... What information do you have? ...
written 7 weeks ago by Emily_Ensembl21k
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Answer: A: Problem with BiomaRt::useMart function Landscape Genomics
... `host = "https://plants.ensembl.org"` ...
written 7 weeks ago by Emily_Ensembl21k
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Comment: C: I am confused which allele is the wildtype for certain SNPs
... The alleles of the variant are A/G, the alleles in the gene are T/C. When referring only to the variant, the convention is to always talk about the forward strand allele. The papers you are referring to are using the alleles in the gene. ...
written 9 weeks ago by Emily_Ensembl21k
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Answer: A: I am confused which allele is the wildtype for certain SNPs
... A (or T if you're talking about the gene) is the reference allele. That means it is the allele that is found on the reference genome. The major allele is G. This is the most frequent allele in the [1000 Genomes](http://www.ensembl.org/Homo_sapiens/Variation/Population?db=core;r=7:87549785-87550785; ...
written 9 weeks ago by Emily_Ensembl21k
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Answer: A: VEP repeated region flag
... We haven't got any plugins to check repeat regions, I'm afraid. If you have a suitable bed file you can use the [custom annotations](http://www.ensembl.org/info/docs/tools/vep/script/vep_custom.html) options, but we don't release bed files of the repeats. ...
written 9 weeks ago by Emily_Ensembl21k
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Answer: A: LINK SNPS TO GENES USING BIOMART, KEEPING YOUR INITIAL POSITIONS IN THE RESULTIN
... Don't use BioMart, use the [VEP](https://www.ensembl.org/info/docs/tools/vep/index.html) instead. ...
written 11 weeks ago by Emily_Ensembl21k

Latest awards to Emily_Ensembl

Teacher 6 days ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Popular Question 12 days ago, created a question with more than 1,000 views. For Free Ensembl courses
Appreciated 12 days ago, created a post with more than 5 votes. For A: Venter Genome Vcf
Appreciated 13 days ago, created a post with more than 5 votes. For A: Venter Genome Vcf
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Scholar 5 weeks ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
Good Answer 10 weeks ago, created an answer that was upvoted at least 5 times. For A: Venter Genome Vcf
Appreciated 10 weeks ago, created a post with more than 5 votes. For A: Venter Genome Vcf
Scholar 3 months ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Popular Question 3 months ago, created a question with more than 1,000 views. For Free Ensembl courses
Appreciated 3 months ago, created a post with more than 5 votes. For A: Venter Genome Vcf
Appreciated 3 months ago, created a post with more than 5 votes. For A: Venter Genome Vcf
Scholar 7 months ago, created an answer that has been accepted. For A: misc_RNA in Ensembl
Scholar 7 months ago, created an answer that has been accepted. For A: (Where) can I download the Ensembl cross reference database?
Popular Question 7 months ago, created a question with more than 1,000 views. For Ensembl eHive Software developer
Popular Question 7 months ago, created a question with more than 1,000 views. For Gene annotation project leader at Ensembl
Popular Question 7 months ago, created a question with more than 1,000 views. For Post tagging etiquette musings
Popular Question 7 months ago, created a question with more than 1,000 views. For Free Ensembl courses
Great Question 7 months ago, created a question with more than 5,000 views. For The Ensembl Vep For Easy Analysis Of Your Variants
Appreciated 7 months ago, created a post with more than 5 votes. For A: Venter Genome Vcf
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: misc_RNA in Ensembl
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: (Where) can I download the Ensembl cross reference database?
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: What Is A "Gene"? Redundancies In Refseq Versus Ensembl

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