User: mrashad

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mrashad40
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Posts by mrashad

<prev • 19 results • page 1 of 2 • next >
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Comment: C: Question: unclassified taxonomy rank
... you have right to remove it, really sorry ...
written 14 days ago by mrashad40
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(Closed) Question: unclassified taxonomy rank
... I have data of 16srRNA and taxonomy for the bacteria of this data but I found among this taxonomy something called: 1- If I found : genus_unclassified_Clostridiales_Incertae.Sedis.XIII, so the taxonomy identified till order Clostridiales or identified till family Clostridiales_Incertae.Sedis.XIII ? ...
#taxonomy #16s written 14 days ago by mrashad40
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Comment: C: unclassified taxonomy rank
... I have two other questions related to this question: 1- If I found : genus_unclassified_Clostridiales_Incertae.Sedis.XIII, so the taxonomy identified till order Clostridiales or identified till family Clostridiales_Incertae.Sedis.XIII ? 2- and if I found : genus_Erysipelotrichaceae_incertae_sedis th ...
written 18 days ago by mrashad40
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difference between different sequencing technologies
... I need to know the difference between global nuclear run-on sequencing (GRO-seq) and precision nuclear run-on sequencing (PRO-seq). Could anyone help me just in brief ? or guide me to article that let me differentiate between them ...
#sequencing written 25 days ago by mrashad40
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Comment: C: unclassified taxonomy rank
... Thanks a lot for reply ...
written 4 weeks ago by mrashad40
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Comment: C: pearson correlation or Euclidean distance for clustering?
... Thanks a lot I got it ...
written 4 weeks ago by mrashad40
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Comment: C: pearson correlation or Euclidean distance for clustering?
... I got it, thanks a lot for this fruitful answer. ...
written 4 weeks ago by mrashad40
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unclassified taxonomy rank
... I have data of 16srRNA and taxonomy for the bacteria of this data but I found among this taxonomy something called: `genus_unclassified_Porphyromonadaceae` This means that the taxonomy identified till family Porphyromonadaceae but the genus not identified therefore species not identified [ `f_Porp ...
16s taxonomy written 4 weeks ago by mrashad40 • updated 4 weeks ago by Mensur Dlakic6.9k
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pearson correlation or Euclidean distance for clustering?
... I have a matrix of multi omics expression and need to make a clustering using Hierarchical clustering and k means but confused between the used distance Euclidean distance or Pearson correlation. Is there any guide for which one of them should be used in expression data ? ...
#clustering #gene_expression written 5 weeks ago by mrashad40 • updated 5 weeks ago by Kevin Blighe66k
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Comment: C: Is there a way to find Go terms for genes with kegg orthology (ko) ID ?
... I got it, thanks a lot ...
written 8 weeks ago by mrashad40

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