User: mrashad
mrashad • 50
- Reputation:
- 50
- Status:
- Trusted
- Location:
- Last seen:
- 4 days, 22 hours ago
- Joined:
- 8 months, 2 weeks ago
- Email:
- m******@nu.edu.eg
Posts by mrashad
<prev
• 44 results •
page 1 of 5 •
next >
0
votes
0
answers
38
views
0
answers
... Dears,
I make a differential expression analysis using t test by multtest package in R under conditions of p-value < 0.05.
So the output of this step is group of genes with significant p values and partially significant p adjusted values as shown in this link:
https://ibb.co/LDF9CBV
I used this ...
written 5 days ago by
mrashad • 50
0
votes
0
answers
9.1k
views
0
answers
... Dear,
thanks a lot for this tutorial.
But, If I want to get the p adjusted for the pathways in the output result as you know the output contain lowest p value and highest p value not the p adjusted.
How I can do that ?
I tried to use p.adjust function in R, is it right way or not ? if not, is there ...
written 8 days ago by
mrashad • 50
0
votes
0
answers
76
views
0
answers
... Dears,
I need to visualize the pathways that common between RNA data and cytokine data with explaining the contribution of each gene and cytokine.
Note that the digits in the columns of RNA and cytokine is p value.
https://ibb.co/17PSTkP
Thanks, ...
written 21 days ago by
mrashad • 50
0
votes
0
answers
139
views
0
answers
... Dear,
I have sample of metabolites and bacteria sampled from group of patients through blood and gut/nasal cavity respectively.
Is there a tool helping me to determine if these metabolites are specific for blood or not ( tissue specified ) and the same for the bacteria to gut /nasal cavity ?
I need ...
written 4 weeks ago by
mrashad • 50
0
votes
1
answer
161
views
1
answers
Comment:
C: Heatmaps by pheatmap
... That's it, It works with Complexheatmap.
Thanks a lot for this fruitful answer ...
written 5 weeks ago by
mrashad • 50
4
votes
1
answer
161
views
1
answer
... Dear
I make the following heatmap using pheatmap package, but I need to put a title for legend. How to make that ?
if there is other package better than pheatmap make a clustering for rows and columns + can make a title for legend through it, please tell me about it.
https://ibb.co/VQM7px0 ...
written 5 weeks ago by
mrashad • 50
• updated
5 weeks ago by
k.nirmalraman • 1.1k
0
votes
1
answer
174
views
1
answers
Comment:
A: scale free topology in WGCNA
... Honestly, it is the first time for me to use WGCNA and I used this tutorial as a guide:
https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/FemaleLiver-02-networkConstr-auto.pdf
+ video for its author: https://www.youtube.com/watch?v=rRIRMW_RRS4
but there is no step ...
written 6 weeks ago by
mrashad • 50
2
votes
1
answer
174
views
1
answer
... Dear this image resulted from plotting the result of picksoftthreshold function in WGCNA ![scale_free and mean connectivity][1]
I need to ask what is the meaning of the sft result from using picksoftthreshold function in WGCNA as this result is considered as a list contain powerestimate which equal ...
written 6 weeks ago by
mrashad • 50
0
votes
2
answers
180
views
2
answers
Comment:
C: Diseases related pathways
... I got it now, thanks a lot.
The first link is used if you search for any pathway that contain "diabetes" anywhere, while the other link mentions all pathways in Diabetes disease through KEGG disease database. ...
written 6 weeks ago by
mrashad • 50
0
votes
2
answers
180
views
2
answers
Comment:
C: Diseases related pathways
... Thanks a lot for this fruitful answer ...
written 6 weeks ago by
mrashad • 50
Latest awards to mrashad
Supporter
5 weeks ago,
voted at least 25 times.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2211 users visited in the last hour