User: cts

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cts1.5k
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Posts by cts

<prev • 108 results • page 1 of 11 • next >
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Comment: C: Does GATB support paired reads
... Yes some snippets on decorating nodes with information would be much appreciated, thankyou  ...
written 2.8 years ago by cts1.5k
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Comment: C: Does GATB support paired reads
... Thank you Rayan for your detailed comments ...
written 2.8 years ago by cts1.5k
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Does GATB support paired reads
... I've been looking at the snippets and examples in the source code but none of them mention using paired read information. Is it possible with GATB to create graphs that are decorated using paired read information? ...
gatb written 2.8 years ago by cts1.5k • updated 2.8 years ago by edrezen680
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Answer: A: EMBOSS needle question
... Have you installed emboss separately and is it in your path? Biopython is saying that 'needle' is not a recognized command, which suggests to me that it is not installed. A quick test for this is at your command line type 'needle' and then enter. If you get a message like 'command not found' then yo ...
written 2.9 years ago by cts1.5k
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Is the tbl2asn source code available
... Does anyone know whether the source code for NCBI's tbl2asn tool is or whether it's even available? The ftp site only has the binary version ...
ncbi written 2.9 years ago by cts1.5k • updated 2.9 years ago by Pierre Lindenbaum96k
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Answer: A: ANIb versus ANIm
... check out this paper for a comparison of the two methods as well as a third way of performing these calculations using tetranucleotide frequencies. ...
written 2.9 years ago by cts1.5k
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Comment: C: Are there any multi-omics public data sets available online?
... Well the genomic and transcriptomic data for AMD can be found here and the metagenomic data for the aquifer can be found here, not sure where the proteomic data lives (or even if it's available) you could contact the Banfield lab directly for that data or for info on where it lives. ...
written 2.9 years ago by cts1.5k
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Answer: A: Are there any multi-omics public data sets available online?
... Jill Banfield's group does this quite a bit. I know that there is metagenomic and metaproteomic data from the Acid mine drainage communities. They have also done work more recently with acetate amended aquifers which has both genomes and proteomes. ...
written 2.9 years ago by cts1.5k
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Comment: C: Mapsembler2 targeted micro assembly and visualization of the local assembly grap
... Still some bugs but compiled with the following modifications: 1. added the <cstdlib> header include to kissreads_graph/block_allocator.cpp so that free and malloc were found 2. removed reference to OpenMP in the kissreads Makefile - the code itself accounted for a lack of OpenMP but the cfl ...
written 2.9 years ago by cts1.5k
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Comment: C: Mapsembler2 targeted micro assembly and visualization of the local assembly grap
... It got further this time but failed for different reasons: ####################################################################### ###################### COMPILE KISSREADSGRAPH ######################### ####################################################################### g++ -lz -o block_alloca ...
written 2.9 years ago by cts1.5k

Latest awards to cts

Good Answer 2.7 years ago, created an answer that was upvoted at least 5 times. For A: How To Annotate A Newly Sequenced Genome
Scholar 2.8 years ago, created an answer that has been accepted. For A: [samtools reheader] Can't change chromosome name
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: How To Annotate A Newly Sequenced Genome
Scholar 2.9 years ago, created an answer that has been accepted. For A: [samtools reheader] Can't change chromosome name
Centurion 2.9 years ago, created 100 posts.
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: How To Identify The 16S Rrna Gene Sequence In A Genome
Scholar 3.1 years ago, created an answer that has been accepted. For A: [samtools reheader] Can't change chromosome name
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: Command Line Program For Constructing Phylogeny Tree In Minutes (500 Sequences)?
Scholar 3.1 years ago, created an answer that has been accepted. For A: [samtools reheader] Can't change chromosome name
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: Command Line Program For Constructing Phylogeny Tree In Minutes (500 Sequences)?
Guru 3.2 years ago, received more than 100 upvotes.
Appreciated 3.2 years ago, created a post with more than 5 votes. For A: How To Annotate A Newly Sequenced Genome
Teacher 3.3 years ago, created an answer with at least 3 up-votes. For A: Command Line Program For Constructing Phylogeny Tree In Minutes (500 Sequences)?
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Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: Command Line Program For Constructing Phylogeny Tree In Minutes (500 Sequences)?
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: Compare A Denovo Assembly To The Reference Genome
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Is Igv Software The Only Available Software To Open Bam File
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: What Does It Mean To Find The Intersection, Complement And Union Of .Vcf Files?
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: Creating A Phylogenetic Tree From A Multiple Sequence Alignment.
Appreciated 4.1 years ago, created a post with more than 5 votes. For A: How To Annotate A Newly Sequenced Genome
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: How To Annotate A Newly Sequenced Genome
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: How To Identify The 16S Rrna Gene Sequence In A Genome
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: How To Extract All The Gene Names From A Chromosomal Region In Ensembl Using Pyc

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