User: BS

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BS0
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Posts by BS

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Comment: C: DESeq results based on lfcthreshold
... Thank you Andres:) I understand the implication of using a strict lfcthreshold. ...
written 1 day ago by BS0
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Comment: A: DESeq results based on lfcthreshold
... Thank you very much Kevin for the answer:) The experimental design and the species studied are different. However, the data-prep and sequencing methods were similar. In DESeq if you specify the lfcthreshold the results function will ignore the pvalue. Note that I have used p<0.05 in both cases. ...
written 1 day ago by BS0
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DESeq results based on lfcthreshold
... I have a question regarding the results of DESeq2. With one dataset, by changing the lfcthreshold from 0 to 0.75 I found a decrease in the number of DEGs ---- from 100 to 3. DESeq gave 101 for another set of data with an lfcthreshold of 0.75 and 215 for an lfcthreshold of 0. Why is the DEG drop mo ...
rna-seq written 2 days ago by BS0

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