User: biocyberman

gravatar for biocyberman
biocyberman650
Reputation:
650
Status:
Trusted
Location:
Denmark
Last seen:
2 months, 4 weeks ago
Joined:
5 years, 3 months ago
Email:
b**********@gmail.com

about me

Posts by biocyberman

<prev • 106 results • page 1 of 11 • next >
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Convert COSMIC ID to dbSNP id?
... I downloaded data from COSMIC database, and now want to do batch conversion of the COSMIC ID to dbSNP id. For example, Cosmid variant: COSM425261 . What is the RS number of this SNP? I tried with biomart but did not work: http://www.ensembl.org/biomart/martview/def67ebf751f91c637ecbb873b20d4d1 ...
cosmic snp written 12 weeks ago by biocyberman650 • updated 12 weeks ago by Denise - Open Targets4.4k
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Job: Bioinformatician in Aalborg University Hospital, Denmark
... **Aalborg University Hospital Section of Molecular Diagnostics** We are looking for a motivated bioinformatician to strengthen and expand bioinformatic work force in response to increasing needs of a molecular diagnostic group utilizing big data. **Application deadline: 19th of April 2017** ** ...
denmark job bioinformatician written 14 months ago by biocyberman650
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Comment: C: How to sequentially replace a string with numerical value?
... Despite of Perl6, th best improvement for `Perl` is Python :) Perl6 is a late "make up" of an old time champion. Just personal opinion. ...
written 15 months ago by biocyberman650
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Answer: A: How to sequentially replace a string with numerical value?
... Bash way if you prefer. Here are some cool bash tricks for you. chr=( chr{A..Z} ) # make an array for chromosomes. # now loop through the array to build sed command sedcmd="" for i in {1..26}; do sedcmd=$sedcmd"s/${chr[$i]}/$i/;" # build up 26 sed replacement command :) do ...
written 16 months ago by biocyberman650
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Comment: C: How are rat genome's CpG islands calculated?
... @sybiocoder Can you give a link to document that describes this? ...
written 16 months ago by biocyberman650
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How are rat genome's CpG islands calculated?
... I am looking at this file, and could not find description about its format and how it is generated from rat genome. Can someone give some info about it? http://hgdownload.cse.ucsc.edu/goldenpath/rn6/database/cpgIslandExt.txt.gz ...
ucsc cpg islands written 16 months ago by biocyberman650 • updated 16 months ago by jotan1.2k
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Comment: C: Biostars does not redirect to current thread after login
... I change my computer here and there. And also I don't want my colleagues to post things on my behalf (kidding). Mainly I don't have the habit of saving passwords. ...
written 17 months ago by biocyberman650
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Forum: [Meta] Biostars does not redirect to current thread after login
... I tried looking for a appropriate place to post this question but could not find one. How here we are. It happens to me for at least two years now: When I am reading some thread before login, I want to comment something so I login. After typing my credentials and login successfully, I am redirected ...
biostars meta forum written 17 months ago by biocyberman650 • updated 17 months ago by Ram15k
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Comment: C: Head of Bioinformatics (Glasgow)
... The deadline for application was on 17 July 2016. Any good to bring it back man? ...
written 19 months ago by biocyberman650
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Answer: A: Get cds using bedtools
... 1) Checkout the help for the command below. I think you can experiment with `-name` or `-fullHeader` to see if you get what you want. bedtools getfasta -h Tool: bedtools getfasta (aka fastaFromBed) V ...
written 19 months ago by biocyberman650

Latest awards to biocyberman

Appreciated 13 months ago, created a post with more than 5 votes. For A: Venn diagram with 11 sets
Popular Question 13 months ago, created a question with more than 1,000 views. For Tophat failed at 'Mapping left_kept_reads to transcriptome'
Popular Question 13 months ago, created a question with more than 1,000 views. For Why a de novo assembler is not a transcript assembler?
Popular Question 13 months ago, created a question with more than 1,000 views. For macs2 bdgdiff calculation without genomic background control?
Popular Question 13 months ago, created a question with more than 1,000 views. For Cookbook To Check Effects Of Nonsynonymous Snv To Mrna And Protein?
Popular Question 13 months ago, created a question with more than 1,000 views. For Programatically fetch all GI numbers for nucleotide sequences of a species from NCBI?
Centurion 16 months ago, created 100 posts.
Popular Question 17 months ago, created a question with more than 1,000 views. For Update Biopython'S Seqrecords?
Commentator 2.1 years ago, created a comment with at least 3 up-votes. For C: Bioinformatics freelancers needed
Scholar 2.1 years ago, created an answer that has been accepted. For A: Venn diagram with 11 sets
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Venn diagram with 11 sets
Scholar 2.2 years ago, created an answer that has been accepted. For A: Venn diagram with 11 sets
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Venn diagram with 11 sets
Scholar 2.2 years ago, created an answer that has been accepted. For A: Venn diagram with 11 sets
Scholar 2.4 years ago, created an answer that has been accepted. For A: Venn diagram with 11 sets
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: Tool for reducing contigs!!!!!!
Scholar 2.6 years ago, created an answer that has been accepted. For A: Venn diagram with 11 sets
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: Tool for reducing contigs!!!!!!
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Update Biopython'S Seqrecords?
Supporter 2.8 years ago, voted at least 25 times.
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Tool for reducing contigs!!!!!!
Scholar 3.0 years ago, created an answer that has been accepted. For A: Venn diagram with 11 sets
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Good Answer 3.0 years ago, created an answer that was upvoted at least 5 times. For A: Venn diagram with 11 sets

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