User: Raghul

gravatar for Raghul
Raghul200
Reputation:
200
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Location:
Italy
Last seen:
5 months, 1 week ago
Joined:
8 years ago
Email:
r**********@yahoo.co.in

a newbie to PERL

Posts by Raghul

<prev • 62 results • page 1 of 7 • next >
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Comment: C: Protein classification system
... Thanks for the answer, This is what I am trying to do now! I am selecting enzymes,membrane proteins & proteins with hits to PDB. ...
written 5 months ago by Raghul200
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Protein classification system
... Hi friends, There are several protein classification systems, each of them useful in a way! I want to study the thermophilic adaption of an organism at protein sequence & structure level (SEQUENCE & structure COMPARISON). Which of the available "protein groupings" could give better insight ...
protein_classification extremophiles cog written 6 months ago by Raghul200 • updated 6 months ago by c.chakraborty90
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Comment: C: Starting the assembly with .fastq file
... Sorry it is a .fastq file ...
written 18 months ago by Raghul200
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Comment: C: Starting the assembly with .fa file
... Hi Philipp Sorry for the late reply. I had some network issues & I am working in a small town in Ethiopia. Still looking into the files. Thanks! Raghul I have fastq files(mammalian genome). So I want a assembler for Windows. Can anybody suggest an appropriate tool! Thanks ...
written 18 months ago by Raghul200
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Starting the assembly with .fastq file
... Hi Members, We gave the samples for sequencing & we have obtained the .fastq file & .fastq zip file. I want to assemble & annotate the sequences. It is low/moderate coverage sample. So what can I do next? I have windows computer. Is it enough? Please do not be irritated by the simplicit ...
genome sequence assembly ngs windows written 19 months ago by Raghul200
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Comment: C: Mutational Effects In Trna
... Thank you. Whatever told by you was correct. Sometimes "odd" things happen & I highlighted them wrongly as common! sorry for that! For eg I took a tRNA gene sequence separately & did a prediction with tRNAScan-SE and it told nothing could be predicted. Then I got results with Aragorn (ARW ...
written 4.6 years ago by Raghul200
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Mutational Effects In Trna
... Hi It was easy to learn the possible mutational effects for protein with so much literature available. My case becomes difficult as it happens in mitochondrial tRNA. How can I predict the effects of mutation in a tRNA in positions which are not "active sites"? For eg a mutation in a stem region o ...
written 4.6 years ago by Raghul200 • updated 3.8 years ago by Biostar ♦♦ 20
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Answer: A: Where To Find The Sequence Data About Leukemia?
... Hi I remember some 10 years ago my genetics teacher told me McKusick built a catalog of human genes and phenotypes called OMIM (Online Mendelian Inheritance in Man ) & I checked now in NCBI there is even one for animals (OMIA). Please go to NCBI website & select OMIM, type leukemia, hope u g ...
written 5.4 years ago by Raghul200
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Answer: A: List Of Bioinformatics Books
... Introduction to Bioinformatics. OUP press by Arthur M Lesk is very good for beginners from biology ...
written 5.4 years ago by Raghul200
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Comment: C: Single Long Gene Predicted As Several Small Genes By Software
... Thanks for the answer! Is it acceptable to include protein sequences from 3 related species for "training" in gene prediction? Will this cause errors or more information cause better gene prediction? ...
written 5.4 years ago by Raghul200

Latest awards to Raghul

Popular Question 13 months ago, created a question with more than 1,000 views. For Plot Rna Secondary Structure Data Into Image
Popular Question 18 months ago, created a question with more than 1,000 views. For Ttrna Cloverleaf Model Drawing
Popular Question 18 months ago, created a question with more than 1,000 views. For Extracting Sequences After "Motif" & Between Motifs In Multifasta File
Popular Question 19 months ago, created a question with more than 1,000 views. For Extracting Sequences After "Motif" & Between Motifs In Multifasta File
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Extracting Sequences After "Motif" & Between Motifs In Multifasta File
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Ttrna Cloverleaf Model Drawing
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Homology Modeling With High Sequence Identity
Great Question 3.4 years ago, created a question with more than 5,000 views. For Fasta Format Sequence Parsing With Bioperl
Great Question 3.4 years ago, created a question with more than 5,000 views. For Usage Of Format Specifiers For Blastx In Ncbi Standalone Blast
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Is It Possible To Get Near Global Alignment From Blast?
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Partial Cds Extraction From Incomplete Transcripts
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Substitution Rate Calculation From Protein Alignment
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Ttrna Cloverleaf Model Drawing
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Homology Modeling With High Sequence Identity
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Partial Cds Extraction From Incomplete Transcripts
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Which Bioperl Module Can I Use For Parsing/Mining Blast Output?
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Ttrna Cloverleaf Model Drawing
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Is It Possible To Get Near Global Alignment From Blast?
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Plot Rna Secondary Structure Data Into Image
Popular Question 4.6 years ago, created a question with more than 1,000 views. For Usage Of Format Specifiers For Blastx In Ncbi Standalone Blast
Popular Question 4.6 years ago, created a question with more than 1,000 views. For Is It Possible To Get Near Global Alignment From Blast?
Popular Question 4.6 years ago, created a question with more than 1,000 views. For Fasta Format Sequence Parsing With Bioperl
Popular Question 4.6 years ago, created a question with more than 1,000 views. For Perl How To Isolate Fasta Sequences With A Range Of Values
Supporter 4.6 years ago, voted at least 25 times.
Teacher 4.6 years ago, created an answer with at least 3 up-votes. For A: List Of Bioinformatics Books

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