User: koaeb

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koaeb10
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Posts by koaeb

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Comment: C: Salmon with Sleuth
... Hi dsull, Thank you! ...
written 8 days ago by koaeb10
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Salmon with Sleuth
... Hi, I used "sleuth_prep(s2c, extra_bootstrap_summary = TRUE) " to create sleuth object, and I got a list contains obs_norm_filt, obs_norm and obs_raw, each of them also contains a tpm value. I searched lots of files online but none explained what's the difference among those data frames, especially ...
sleuth salmon rna-seq written 11 days ago by koaeb10 • updated 11 days ago by dsull1.5k
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Import Salmon output by tximport
... Hi, I'm new to this area, so my question may be very basic. I'm using tximport to estimate Salmon output to gene level counts, then perform DE analysis. Based on some online tutorial, I used `countsFromAbundance="lengthScaledTPM"`, but I'm not fully understand how exactly the counts were calculate ...
tximport R salmon rna-seq written 11 days ago by koaeb10 • updated 11 days ago by RamRS28k

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