User: field654
field654 • 0
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Posts by field654
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... I had the same problem and figured it out.
That's just VarScan's fancy way of saying, can't find your input.
Very frustrating.
...
written 2 days ago by
field654 • 0
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... As a matter of fact, when I entered the folder of the index and inspected it worked. I assume the previous time I failed because I mistyped the file name where I missed a "_" or so.
Thank you so much. ...
written 11 days ago by
field654 • 0
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... Yes it does. It's bowtie2-build "genome" "export basename for reference".
I'm really new to bioinformatics and bowtie2. I should definitely have tried that.
I started with the pre-built reference though.
Thank you for you kind help. ...
written 11 days ago by
field654 • 0
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... Hi,
This is really basic but how to I set up the prebuilt reference?
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
I got the reference from the above link. The reference I tried is named "grch38_1kgmaj_bt2.zip"
After I unzipped I got 6 files, with the same base name and suffixes of
.1
. ...
written 11 days ago by
field654 • 0
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