User: field654

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field6540
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Posts by field654

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Answer: A: Using Samtools mpileup with Varscan
... I had the same problem and figured it out. That's just VarScan's fancy way of saying, can't find your input. Very frustrating. ...
written 2 days ago by field6540
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Comment: C: How do I setup the pre-built indexed reference for Bowtie2
... As a matter of fact, when I entered the folder of the index and inspected it worked. I assume the previous time I failed because I mistyped the file name where I missed a "_" or so. Thank you so much. ...
written 11 days ago by field6540
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Comment: C: How do I setup the pre-built indexed reference for Bowtie2
... Yes it does. It's bowtie2-build "genome" "export basename for reference". I'm really new to bioinformatics and bowtie2. I should definitely have tried that. I started with the pre-built reference though. Thank you for you kind help. ...
written 11 days ago by field6540
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How do I setup the pre-built indexed reference for Bowtie2
... Hi, This is really basic but how to I set up the prebuilt reference? http://bowtie-bio.sourceforge.net/bowtie2/index.shtml I got the reference from the above link. The reference I tried is named "grch38_1kgmaj_bt2.zip" After I unzipped I got 6 files, with the same base name and suffixes of .1 . ...
assembly written 11 days ago by field6540

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