User: Audrey

gravatar for Audrey
Audrey20
Reputation:
20
Status:
New User
Location:
France
Last seen:
1 day, 5 hours ago
Joined:
5 months, 2 weeks ago
Email:
a************@outlook.com

Posts by Audrey

<prev • 46 results • page 1 of 5 • next >
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Comment: C: How to add translation of CDS in Artemis?
... Thank you for your reply. I want to have a genbank file looking like this (example): /locus_tag="CS400_15500" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_133737.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /tran ...
written 1 day ago by Audrey20
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How to add translation of CDS in Artemis?
... Hi all, I am trying to add the translated protein sequence on the "Artemis Feature Edit: CDS" but I don't know how. When I go to "Add Qualifer" section I can not find "/translation" therefore I can not add the amino acid sequence of the protein. I didn't find this information on the artemis user g ...
artemis /translation written 1 day ago by Audrey20
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(Closed) Extracting fasta sequences from headers
... Hi all, I have a list of fasta headers : >Strain1_XX >Strain2_YY >Strain3_ZZ I have a multifasta file : >Strain1_XX AAAA >Strain2_YY AAAA >Strain3_ZZ AAAA And I would like to extract specifically the strain number 2 meaning its fasta sequenc ...
fasta extracting headers written 28 days ago by Audrey20
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How to identify specific region using Mauve?
... Hi all, My goal is to find specific genomic regions in a strain of interest in order to design specific primers. To do that, I aligned multiple genomes closely related to the strain to see if there is any specificity. However I am having trouble interpreting Mauve data even with the user guide. I ...
specific region primers mauve written 29 days ago by Audrey20
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Comment: C: Mugsy error -directory must be a directory
... No it doesn't exist. Where should I create this directory? ...
written 6 weeks ago by Audrey20
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Comment: C: Mugsy error -directory must be a directory
... Yes, I did that too. In my Ubuntu terminal, I have this: (Mugsy) administrateur:~$ and when I do: (Mugsy) administrateur:~$ mugsy -h I have the help instructions So I don't know where the issue is ... ...
written 6 weeks ago by Audrey20
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Comment: C: Mugsy error -directory must be a directory
... Thank you for your reply. Yes, i've aldready edited the file mugsyenv.sh: #!/bin/sh export MUGSY_INSTALL=/home/administrateur/Téléchargements/mugsy_x86-64-v1r2.2/mugsy export PATH=$PATH:$MUGSY_INSTALL:$MUGSY_INSTALL/mapping export PERL5LIB=$MUGSY_INSTALL/perllibs #For testing ...
written 6 weeks ago by Audrey20
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Mugsy error -directory must be a directory
... Hi all, I'm just starting with Mugsy for genome alignments and I have some trouble with the usage of Mugsy. I installed it using bioconda and when I activate Mugsy with: `conda activate Mugsy` it works because I can have access to the help page. I'm using this command line: mugsy --director ...
directory path error mugsy written 6 weeks ago by Audrey20
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Comment: C: How to change standard genetic code in Artemis?
... Yes indeed, I have found it! Thank you so much 5heikki!! In the launch window --> Options --> Genetic code tables So helpful, thanks again and sorry for my ignorance .. ...
written 6 weeks ago by Audrey20
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How to change standard genetic code in Artemis?
... Hi all, I am currently working on a *Mycoplasma pneumoniae* strain where UGA is read as tryptophan rather than as a stop codon. I've searched within the Artemis manual but couldn't find anything ... Do you known if I can change the standard genetic code in Artemis to create ORFs correctly in *M. ...
artemis mycosplasma genetic code written 6 weeks ago by Audrey20

Latest awards to Audrey

Supporter 5 months ago, voted at least 25 times.
Scholar 5 months ago, created an answer that has been accepted. For A: How to keep the top hits only in the output file of hmmscan?

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