User: Audrey
Audrey • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- France
- Last seen:
- 1 day, 5 hours ago
- Joined:
- 5 months, 2 weeks ago
- Email:
- a************@outlook.com
Posts by Audrey
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... Thank you for your reply.
I want to have a genbank file looking like this (example):
/locus_tag="CS400_15500"
/inference="COORDINATES: similar to AA sequence:RefSeq:YP_133737.1"
/note="Derived by automated computational analysis using gene prediction method: Protein Homology."
/codon_start=1
/tran ...
written 1 day ago by
Audrey • 20
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... Hi all,
I am trying to add the translated protein sequence on the "Artemis Feature Edit: CDS" but I don't know how.
When I go to "Add Qualifer" section I can not find "/translation" therefore I can not add the amino acid sequence of the protein.
I didn't find this information on the artemis user g ...
written 1 day ago by
Audrey • 20
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5 follow
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... Hi all,
I have a list of fasta headers :
>Strain1_XX
>Strain2_YY
>Strain3_ZZ
I have a multifasta file :
>Strain1_XX
AAAA
>Strain2_YY
AAAA
>Strain3_ZZ
AAAA
And I would like to extract specifically the strain number 2 meaning its fasta sequenc ...
written 28 days ago by
Audrey • 20
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... Hi all,
My goal is to find specific genomic regions in a strain of interest in order to design specific primers.
To do that, I aligned multiple genomes closely related to the strain to see if there is any specificity. However I am having trouble interpreting Mauve data even with the user guide.
I ...
written 29 days ago by
Audrey • 20
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... No it doesn't exist. Where should I create this directory? ...
written 6 weeks ago by
Audrey • 20
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... Yes, I did that too.
In my Ubuntu terminal, I have this:
(Mugsy) administrateur:~$
and when I do:
(Mugsy) administrateur:~$ mugsy -h
I have the help instructions
So I don't know where the issue is ... ...
written 6 weeks ago by
Audrey • 20
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... Thank you for your reply.
Yes, i've aldready edited the file mugsyenv.sh:
#!/bin/sh
export MUGSY_INSTALL=/home/administrateur/Téléchargements/mugsy_x86-64-v1r2.2/mugsy
export PATH=$PATH:$MUGSY_INSTALL:$MUGSY_INSTALL/mapping
export PERL5LIB=$MUGSY_INSTALL/perllibs
#For testing ...
written 6 weeks ago by
Audrey • 20
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... Hi all,
I'm just starting with Mugsy for genome alignments and I have some trouble with the usage of Mugsy.
I installed it using bioconda and when I activate Mugsy with: `conda activate Mugsy` it works because I can have access to the help page.
I'm using this command line:
mugsy --director ...
written 6 weeks ago by
Audrey • 20
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105
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1
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... Yes indeed, I have found it! Thank you so much 5heikki!!
In the launch window --> Options --> Genetic code tables
So helpful, thanks again and sorry for my ignorance .. ...
written 6 weeks ago by
Audrey • 20
2
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1
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105
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1
answer
... Hi all,
I am currently working on a *Mycoplasma pneumoniae* strain where UGA is read as tryptophan rather than as a stop codon.
I've searched within the Artemis manual but couldn't find anything ...
Do you known if I can change the standard genetic code in Artemis to create ORFs correctly in *M. ...
written 6 weeks ago by
Audrey • 20
Latest awards to Audrey
Supporter
5 months ago,
voted at least 25 times.
Scholar
5 months ago,
created an answer that has been accepted.
For A: How to keep the top hits only in the output file of hmmscan?
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