User: Ting-You Wang
- Hong Kong/The University of Hong Kong
- Last seen:
- 11 months ago
- 8 years, 4 months ago
Posts by Ting-You Wang
How to link disease-associated genes and deferentially expressed genes in a protein-protein interaction network?
... Hi, could anybody help me about how to link disease-associated genes and DEGs in a PPI network? and what's more, identify meaningful biological pathways or modules by using some approaches? the software/plugins and steps? Here is my problem: (1) a list of disease-associated genes from GWAS study an ...
... Currently, I think you can use STAR and GATK pipeline for RNA-seq variants calling. http://gatkforums.broadinstitute.org/discussion/3891/calling-variants-in-rnaseq ...
... Try this one. http://genoverse.org/ (lightweight and HTML5 based genome browser) or http://www.genomesunzipped.org/jbrowse/ (jbrowse based) The main caveat is that you have to load your own customized data. Gencode uses this one. http://www.biodalliance.org/ ...
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