User: gaom001

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gaom00110
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Posts by gaom001

<prev • 7 results • page 1 of 1 • next >
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(Closed) Error: Aesthetics must be either length 1 or the same as the data (): colour ( EnhancedVolcano )
... Hi, I have DEGs file (DEAdf) with log2FC and padjust. I am trying to look at significant dowreguated and upregulated genes in enhanced volcano plot according to my cutoff. To visulize the up and down regulated genes, I customized them into different colors (keyvals.colour), but somehow it came out ...
rna-seq written 5 weeks ago by gaom00110
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Answer: A: how to make bar plot sorted by both -log(p.adjust value) and ontology classifica
... like this ![enter image description here][1] [1]: https://i.ibb.co/5kVJ3zn/Picture3.jpg ...
written 6 weeks ago by gaom00110
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how to make bar plot sorted by both -log(p.adjust value) and ontology classification
... ![enter image description here][1]Does any one know how to seprate bar plot by ontology and sort by -log(p.adjust value)? I just want to show top 10 for each catagroy. Thank you! ![enter image description here][2] [1]: https://i.ibb.co/p4cNtTj/Picture2.jpg ...
R written 6 weeks ago by gaom00110
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Comment: C: weird to see top gene mutation frequency on my dashboard (plotmafSummary(maf))
... Yes, they have same percentage, but the top gene bar length is longer than others which have same percentage. I tried more samples today, and it did show again. It is very weried, but I found one gene called 4-Mar in my csv file. lol... Thank you again. ...
written 6 weeks ago by gaom00110
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Comment: C: weird to see top gene mutation frequency on my dashboard (plotmafSummary(maf))
... You are right, I only have 3 samples. I tried more samples today, and I did not see this odd again. The length of the top gene bar is same as others for more samples. ...
written 6 weeks ago by gaom00110
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Comment: A: so strange about top genes mutatnt freq in my plotmafSummary dashboard
... ![enter image description here][1]![][2] [1]: https://i.ibb.co/Dw9NJ12/Picture1.png [2]: https://ibb.co/vL3bFcn ...
written 6 weeks ago by gaom00110
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weird to see top gene mutation frequency on my dashboard (plotmafSummary(maf))
... Is there anyone knows what is going on here? Never saw this before. ![enter image description here][1] [1]: https://i.ibb.co/Dw9NJ12/Picture1.png ...
maf R written 6 weeks ago by gaom00110 • updated 6 weeks ago by h.mon31k

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