User: yaximik

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yaximik0
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Posts by yaximik

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Comment: A: aligning to circular sequence
... No, this is just alignment of a contig previously assembled separately. CLC Bio developers confirmed that their Genomics Workbench aligner cannot handle circularity. As workaround they suggested either to use their Map to a Reference tool, which can handle circularity, or to align to a duplicated ci ...
written 10 days ago by yaximik0
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Comment: A: aligning to circular sequence
... Yes, I guess they are scratching pumpkins... I just wanted to know if anyone in the community is aware of other possibilities, like open source... ...
written 12 days ago by yaximik0
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aligning to circular sequence
... In regard to 7 yrs old discussion about aligning linear to circular sequences - is anyone aware of aligners that can handle such alignment properly? For alignment purposes, for example, CLC-Bio Genomic Workbench does not seem to be aware if sequence is circular, although it can show rCRS mtDNA as c ...
alignment written 12 days ago by yaximik0
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Comment: A: Aligning Circular Sequences
... CLC-Bio Genomic Workbench does not seem to be aware for alignment purposes if sequence is circular. Although it can show rCRS mtDNA as circular, it cannot properly align to it a linear sequence that is should align between pos. 16022-origin-1280. Nor can Geneious, for another example. ...
written 12 days ago by yaximik0

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