User: cacaucenturion

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Posts by cacaucenturion

<prev • 43 results • page 1 of 5 • next >
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Answer: A: Blastclust Has Been Depreciated. Does Anyone Know Why?
... You can try BLAST2.2.14, it contains BLASTCLUST! ...
written 4.9 years ago by cacaucenturion210
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How To Write A Perl Script To Do Entrz Search Without Using Bioperl
... How to write a PERL script to do Entrz search without using BIOPERL? I was confused by this issue for several days. Thanks for help! ...
perl entrez written 5.0 years ago by cacaucenturion210 • updated 5.0 years ago by Tky980
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How To Visualize The Phylogenetic Relationship Among A Group Of Organisms In A Phylogenetic Tree?
... I remember there is a software that has such a function but I forget which one it is? Would anyone let me know how to deal with my problem? Thanks! ...
phylogenetics written 5.0 years ago by cacaucenturion210 • updated 18 months ago by Ron730
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Comment: C: Clustering Of Ncrna
... Actually my question is that what sequences I should choose to start making alignments and building HMM? Can I use another kind of software like CDhit to get a clustering result initially and then use the largest cluster to build the HMM? Thanks! ...
written 5.0 years ago by cacaucenturion210
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Comment: C: Clustering Of Ncrna
... Thanks very much! So if I have a lot of RNA sequences and do not know which families they should belong to, how can I build HMM? Thanks! ...
written 5.0 years ago by cacaucenturion210
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How To Generate Rna Multiple Sequence Alignment Based On The Secondary Structure That Is Already Known Of One Or Several Sequences?
... How to generate RNA multiple sequence alignment based on the secondary structure that is already known of one or several sequences? Which programme should I use? RNAz or something included in Vienna RNA package? Thanks a lot! ...
rna msa written 5.0 years ago by cacaucenturion210
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Comment: C: How Could We Generate A Tree With Bootstrap Value With One Command Using Raxml?
... Thanks a lot! I got it! ...
written 5.0 years ago by cacaucenturion210
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Comment: C: How Could We Generate A Tree With Bootstrap Value With One Command Using Raxml?
... Thanks! But the output results do not include a best tree with bootstrap value on it. Could you tell me how I can get a tree with bootstrap value? Thanks! ...
written 5.0 years ago by cacaucenturion210
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Answer: A: How Do You Know A Msa Is Informative Enough To Use Sequence Analysis Tools On It
... 1.use eyes to see. 2.use software to help you find informative regions i.e. Gblock ...
written 5.0 years ago by cacaucenturion210
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How Could We Generate A Tree With Bootstrap Value With One Command Using Raxml?
... Hi All, I tried raxmlHPC -m PROTCATJTT -p 12345 -b 12345 -# 100 -s $myfile -n $myname -f d but just got multiple bootstrap trees. Thanks! ...
phylogenetics written 5.0 years ago by cacaucenturion210 • updated 5.0 years ago by David W4.7k

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