User: tomilova.ekaterina.rp

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Posts by tomilova.ekaterina.rp

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Structural variations intersection
... I intersect the structural variations of the vcf-files using Survivor. However, I don't know what principle the intersection is based on. I understand all the settings of the program, but I cannot find any reasonable confirmation in the articles that exactly is considered an intersection. Is there a ...
next-gen snp written 9 weeks ago by tomilova.ekaterina.rp0 • updated 12 days ago by Biostar ♦♦ 20
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Comment: C: How to get raw data (fastq after sequencer) for data from LINCS?
... Thanks! For some sets, judging by the description, this is really an array of data, but, for example, for the dataset "iPSC (Exp 1) - ALS, SMA and Control (unaffected) subject-derived iPSC lines - RNA-seq", the data description contains information about the sequencing instrument (Illumina), kit s ...
written 6 months ago by tomilova.ekaterina.rp0
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How to get raw data (fastq after sequencer) for data from LINCS?
... I found datasets of interest to me at LINCS (http://lincsproject.org/LINCS/). I found that the data can be downloaded from GEO (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70138). However, the GEO contains preprocessed data, and there is no link to download the raw data from the SRA. Was t ...
database rna-seq written 6 months ago by tomilova.ekaterina.rp0

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