User: Aldo

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Aldo60
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6 years, 3 months ago
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6 years, 6 months ago
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Posts by Aldo

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Filtering Msa For Phylogenetic Tree Construction
... You should check trimAl tool at http://trimal.cgenomics.org/ Here is the associated reference: http://www.ncbi.nlm.nih.gov/pubmed/19505945 ...
written 6.4 years ago by Aldo60
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Answer: A: What To Do If Templates Do Not Cover Entire Target Sequence In Homology Modeling
... How do you find the homologs? Do you perform a single blast vs pdb database? You should try to find remote homologs for the uncovred region of your protein. For example, HHpred: http://toolkit.tuebingen.mpg.de/hhpred Also, you can try with the I-TASSER server: http://zhanglab.ccmb.med.umich.edu/I ...
written 6.5 years ago by Aldo60
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Answer: A: Converting "Multiconformer" Sdf To Multistate Pdb With Openbabel
... You should try this: babel *.sdf -opdb -m Also, check "File Conversion" section on this link: http://openbabel.org/wiki/Tutorial:Basic_Usage ...
written 6.6 years ago by Aldo60
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Answer: A: How To Find Proteins Related To Patogenicity Of A Bacteria ?
... You should check these databases: http://www.mgc.ac.cn/VFs/main.htm http://mvirdb.llnl.gov/ ...
written 6.6 years ago by Aldo60
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Answer: A: The Relationship Between Protein Abundance And Protein Function
... Possibly, this information might be useful for you: Vogel et al. 2012 Laurent et al. 2010 Vogel et al. 2010 de Sousa Abreu et al. 2009 ...
written 6.6 years ago by Aldo60

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