User: MEITUO
MEITUO • 10
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Posts by MEITUO
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... hi everyone!
i am using blast+ to make db, but i one error
command line:
ncbi-blast-2.10.1+/bin/makeblastdb -in plasmid_refseq.fasta -dbtype nucl -parse_s
error:
Keep MBits: T
Maximum file size: 1000000000B
No volumes were created.
Error: mdb_env_open: Cannot allocate m ...
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... thnaks, i will try to look at it ...
written 9 days ago by
MEITUO • 10
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... i had used randomreads.sh, but it is quite slow if i want to get 10,000,000 reads, so i try to use other tools, whether these are more quickly ...
written 9 days ago by
MEITUO • 10
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... ART/art_bin_MountRainier/art_illumina -ss HS25 -sam -i precision_dataset.fna -l 150 -f 1 -o art-paired-dat
====================ART====================
ART_Illumina (2008-2016)
Q Version 2.5.8 (June 7, 2016)
Contact: Weichun Hu ...
written 9 days ago by
MEITUO • 10
• updated
9 days ago by
Mensur Dlakic • 6.9k
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... hi!
the input file of DAVID is a gene list, is the gene list in the emapper.annotations file? or how can i get the gene list? ...
written 29 days ago by
MEITUO • 10
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... hi!
I ran `eggong-emapper` to get the `emapper.annotations` file, which has the information of KEGG pathway, ko..., but how I can get the metabolism pathway and functional gene enrichment analysis. Is there any tutorial? ...
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... in the binning process, the input file is two sample` s fasta file and coverage file, so the binning is individual sample, now i want to binnng non redundant contig set, so the input is only one fasta file, but the coverage files are multiple, so how to solve this problem. ...
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Comment:
C: counting gene distance
... i mean in a genome, which has many genes, so how to calculate the physical distance of two neighboring gene ...
written 5 weeks ago by
MEITUO • 10
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... Does anyone knows how to count the distance of the gene in the genome, and is there any tool available? ...
written 6 weeks ago by
MEITUO • 10
• updated
5 weeks ago by
Alex Reynolds ♦ 31k
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