User: MEITUO

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MEITUO10
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Posts by MEITUO

<prev • 9 results • page 1 of 1 • next >
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blast+ v2.10.1. error Error: mdb_env_open: Cannot allocate memory
... hi everyone! i am using blast+ to make db, but i one error command line: ncbi-blast-2.10.1+/bin/makeblastdb -in plasmid_refseq.fasta -dbtype nucl -parse_s error: Keep MBits: T Maximum file size: 1000000000B No volumes were created. Error: mdb_env_open: Cannot allocate m ...
software error alignment sequencing written 3 days ago by MEITUO10 • updated 3 days ago by genomax91k
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Comment: C: Segmentaton fault with ART for simulating paried-reads
... thnaks, i will try to look at it ...
written 9 days ago by MEITUO10
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Comment: C: Segmentaton fault with ART for simulating paried-reads
... i had used randomreads.sh, but it is quite slow if i want to get 10,000,000 reads, so i try to use other tools, whether these are more quickly ...
written 9 days ago by MEITUO10
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Segmentaton fault with ART for simulating paried-reads
... ART/art_bin_MountRainier/art_illumina -ss HS25 -sam -i precision_dataset.fna -l 150 -f 1 -o art-paired-dat ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 7, 2016) Contact: Weichun Hu ...
next-gen sequencing written 9 days ago by MEITUO10 • updated 9 days ago by Mensur Dlakic6.9k
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Comment: C: kegg enrichment and pathway analysis
... hi! the input file of DAVID is a gene list, is the gene list in the emapper.annotations file? or how can i get the gene list? ...
written 29 days ago by MEITUO10
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kegg enrichment and pathway analysis
... hi! I ran `eggong-emapper` to get the `emapper.annotations` file, which has the information of KEGG pathway, ko..., but how I can get the metabolism pathway and functional gene enrichment analysis. Is there any tutorial? ...
gene written 4 weeks ago by MEITUO10 • updated 4 weeks ago by RamRS30k
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how to binning non-redundant contigs set?
... in the binning process, the input file is two sample` s fasta file and coverage file, so the binning is individual sample, now i want to binnng non redundant contig set, so the input is only one fasta file, but the coverage files are multiple, so how to solve this problem. ...
next-gen written 5 weeks ago by MEITUO10 • updated 5 weeks ago by genomax91k
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Comment: C: counting gene distance
... i mean in a genome, which has many genes, so how to calculate the physical distance of two neighboring gene ...
written 5 weeks ago by MEITUO10
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counting gene distance
... Does anyone knows how to count the distance of the gene in the genome, and is there any tool available? ...
genome written 6 weeks ago by MEITUO10 • updated 5 weeks ago by Alex Reynolds31k

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