User: rob.costa1234

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rob.costa1234250
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Posts by rob.costa1234

<prev • 154 results • page 1 of 16 • next >
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Comment: A: Cell type pathway ScRNAseq
... I am also interested to know what pathway tool is used for single cell RNA seq data. ...
written 13 days ago by rob.costa1234250
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pathway genes for mouse
... I am looking for list of genes associated with EGF pathway of mouse. Is there a database or other method to access such list. Msig, David and other don't provide such list but will analyze list of genes ...
pathway written 11 weeks ago by rob.costa1234250 • updated 11 weeks ago by Jean-Karim Heriche22k
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Comment: A: microRNA-seq analysis from RNA-seq data
... You will be better of doing small RNA seq separately to analyze micro or other small RNA ...
written 11 weeks ago by rob.costa1234250
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Comment: C: Question about COVID19 data sets
... It is useful. I think it does not have clinical out come of patients as well as hosts sequencing as noted in second point. ...
written 11 weeks ago by rob.costa1234250
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Question about COVID19 data sets
... I am looking to download or analyze a compilation of following two data sets : 1. Sequencing of virus isolates from COVID 19 patients.( if not all most of them different geographical areas) 2. Covid Positive patents at the time of infection and either same patients / different patients that have r ...
general questions data written 11 weeks ago by rob.costa1234250
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human and mouse Receptor database
... Is there a web based database that has information- sequences or at least names all the possible receptors in human tissues? Thanks ...
data base written 12 weeks ago by rob.costa1234250
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Pathway targeted genes
... I am working on to find NFkB targeted genes in a list of differentially expressed gene lists. My question is The genes from the DE gene list that are part of the NFkB pathway in a typical pathway anlaysis will be considered as the targets of NFKB pathway Or I have to look at some other databases. An ...
pathway written 12 weeks ago by rob.costa1234250 • updated 12 weeks ago by gayachit200
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Comment: C: GSEA analaysis understaning
... The paper @ https://www.tandfonline.com/doi/full/10.1080/21623945.2019.1649578 has concluded based on just gene ratio what is most significant. Is it acceptable? ...
written 3 months ago by rob.costa1234250
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transcription factor from list of genes
... I want to identify from a list of genes if there are any transcription factors how can I do that. Is there a database that can be used ...
transcription factor written 3 months ago by rob.costa1234250
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Comment: C: pathway enriched significant
... Does that mean the lowest FDR p-value (highest-log10p bar) will be considered most significantly enriched? Can we quantitate level of significant enrichment based on level of FDR p-value? I believe the FDR p-value will suggest all significantly enriched pathways. ...
written 3 months ago by rob.costa1234250

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