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Posts by yao.h.1988
... If there may be some confounding factor such as population structured or related individual in your sample , I would recommended that to use mixed Linear model to correct them , some papers in Nature (http://scholar.google.com.hk/scholar?q=mixed+model+GWAS&btnG=&hl=en&as_sdt=0%2C5) will ...
... I think Haploview 4.2 can find LD block in your significant SNPs. Then you can use other method for example biomaRt to find the gene these LD blocks or independent SNPs ...
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