User: Bharat Iyengar

gravatar for Bharat Iyengar
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300
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Location:
Bombay, India
Last seen:
7 months, 4 weeks ago
Joined:
7 years, 7 months ago
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about me

Posts by Bharat Iyengar

<prev • 83 results • page 1 of 9 • next >
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Comment: C: Understanding Sleuth output for multiple samples
... No. I didn't get an answer from anywhere and since it was not my own project (I was helping someone) I didn't check further. In fact, I have now forgotten how exactly sleuth works. I guess, it fits a generalized linear model (perhaps with mixed effects). I am using GLM these days but for a different ...
written 7 months ago by Bharat Iyengar300
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Comment: C: Where is the documentation for PacBio tool bam2fastx?
... Trying. Reading the documentation. Will update. ...
written 17 months ago by Bharat Iyengar300
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Comment: C: Where is the documentation for PacBio tool bam2fastx?
... I just found that there is another application for demultiplexing: [`lima`](https://github.com/PacificBiosciences/barcoding) ...
written 17 months ago by Bharat Iyengar300
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Comment: C: Where is the documentation for PacBio tool bam2fastx?
... I tried running `--split-barcodes` without any argument (not sure if it takes any argument) and it gave an error: `subreads.bam has no barcoding data` ...
written 17 months ago by Bharat Iyengar300
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Comment: C: Where is the documentation for PacBio tool bam2fastx?
... The SMRT link user guide says that the barcodes should be provided in a csv format. Do you think this tool would use the same format? ...
written 17 months ago by Bharat Iyengar300
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Where is the documentation for PacBio tool bam2fastx?
... I am planning to use [bam2fastx][1] tool for converting the BAM files from PacBio sequencing to fastq. (I prefer a command line tool over SMRT link). However, I cannot find any manual for this tool. The help says that there is an option called `--split-barcodes` for demultiplexing. However, there ...
pacbio sequencing written 17 months ago by Bharat Iyengar300
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Comment: C: Are these two proteins homolog?
... I believe biostars should be merged with stackexchange. Since biostars is an independent platform we cannot moderate cross-posts and migrate questions. It is certainly annoying but this problem was created by the administrators. There is no way to co-ordinate between these two communities. In fact n ...
written 2.3 years ago by Bharat Iyengar300
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Comment: C: Are these two proteins homolog?
... I was the one who posted that answer. The OP cross posted here, so I posted my answer as well. ...
written 2.3 years ago by Bharat Iyengar300
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Answer: A: Are these two proteins homolog?
... Homology means shared evolutionary ancestry. Sequence similarity is often used as a proxy for homology but inferences should be made with care. The similarity between two genes/proteins should not just be good but has to be statistically significant (metrics like E-value) for the two genes/protein ...
written 2.3 years ago by Bharat Iyengar300
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Comment: C: Understanding Sleuth output for multiple samples
... I posted a question there but it was not answered! ...
written 3.6 years ago by Bharat Iyengar300

Latest awards to Bharat Iyengar

Great Question 2.2 years ago, created a question with more than 5,000 views. For Tophat: transcriptome building from GTF
Great Question 2.2 years ago, created a question with more than 5,000 views. For What Is The Actual Illumina Smallrna Seq 3' Adapter
Great Question 3.3 years ago, created a question with more than 5,000 views. For Direct Alignment To Transcriptome- Circumventing Tophat, Tweak Cufflinks
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Can tophat/cufflinks output vary on different runs?
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Direct Alignment To Transcriptome- Circumventing Tophat, Tweak Cufflinks
Great Question 5.6 years ago, created a question with more than 5,000 views. For Direct Alignment To Transcriptome- Circumventing Tophat, Tweak Cufflinks
Popular Question 5.6 years ago, created a question with more than 1,000 views. For What Is The Actual Illumina Smallrna Seq 3' Adapter
Popular Question 5.6 years ago, created a question with more than 1,000 views. For Tophat: transcriptome building from GTF
Popular Question 5.6 years ago, created a question with more than 1,000 views. For What causes tophat_reports error?
Student 6.1 years ago, asked a question with at least 3 up-votes. For Problems With Analysis Of Small Rnaseq Data - Adapter Trimming
Popular Question 6.4 years ago, created a question with more than 1,000 views. For Direct Alignment To Transcriptome- Circumventing Tophat, Tweak Cufflinks
Popular Question 6.7 years ago, created a question with more than 1,000 views. For Direct Alignment To Transcriptome- Circumventing Tophat, Tweak Cufflinks

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