User: marcosmorgan

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marcosmorgan90
Reputation:
90
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New User
Location:
MRC centre for regenerative medicine, University of Edinburgh
Website:
http://marcosmorganblo...
Twitter:
MorganMarcos
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Google Scholar Page
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1 month ago
Joined:
4 years, 9 months ago
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Posts by marcosmorgan

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Affymetrix Mouse 2.0 array analysis using LIMMA in R
... If you have something like this in the pdata.txt file ![enter image description here][1] To compare the control to the others you can try this: pd <- read.AnnotatedDataFrame(filename="pdata.txt") cont <- c("control_1", "sample_2", "sample_3", "sample_4", "sample_5", "sample_6" ...
written 17 months ago by marcosmorgan90
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Answer: A: Easy Way To Get 3' Utr Lengths Of A List Of Genes
... This can be done using the GenomicFeatures library from Bioconductor (and dplyr) I will use the refSeq transcripts ("refGene") from mouse ("mm10") library(GenomicFeatures) library(dplyr) refSeq <- makeTxDbFromUCSC(genom="mm10",tablename="refGene") ...
written 18 months ago by marcosmorgan90
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Answer: A: How To Upload Repeat Mask Fasta File On Igv (Integrative Genomics Viewer)
... You can convert your .out file to a .gff3 file using the file converter provided by repeatMasker. Then you can load the .gff3 file to IGV. You can get the converter from here. (Follow the installation steps 1 and 2 if you do not want to install and configure all repeatMasker). Then from the folder ...
written 4.7 years ago by marcosmorgan90
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Answer: A: How To Edit A Bam File With Bio::Db::Bam
... I went through the Bio::DB::Bam::Alignment documentation and found this under “Low-level Bio::DB::Bam::Alignment methods”: These methods are available to objects of type Bio::DB::Bam::Alignment as well as Bio::DB::Bam::AlignWrapper and closely mirror the native C API. ... $tid = $a ...
written 4.7 years ago by marcosmorgan90

Latest awards to marcosmorgan

Appreciated 6 weeks ago, created a post with more than 5 votes. For A: Easy Way To Get 3' Utr Lengths Of A List Of Genes
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: How To Edit A Bam File With Bio::Db::Bam
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: How To Edit A Bam File With Bio::Db::Bam

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