User: marcosmorgan

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marcosmorgan90
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MRC centre for regenerative medicine, University of Edinburgh
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http://marcosmorganblo...
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MorganMarcos
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5 years, 5 months ago
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Posts by marcosmorgan

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Remove duplicates in fasta file based on ID
... And in case your headers have spaces and you also want to consider the sequence awk 'BEGIN{RS=">"}NR>1{sub("\n","\t"); gsub("\n",""); print RS$0}' biostarhelp.txt | awk '!seen[$0]++' | awk -v OFS="\n" '{for(i=2;i ...
written 5 weeks ago by marcosmorgan90
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Answer: A: Affymetrix Mouse 2.0 array analysis using LIMMA in R
... If you have something like this in the pdata.txt file ![enter image description here][1] To compare the control to the others you can try this: pd <- read.AnnotatedDataFrame(filename="pdata.txt") cont <- c("control_1", "sample_2", "sample_3", "sample_4", "sample_5", "sample_6" ...
written 2.1 years ago by marcosmorgan90
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Answer: A: Easy Way To Get 3' Utr Lengths Of A List Of Genes
... This can be done using the GenomicFeatures library from Bioconductor (and dplyr) I will use the refSeq transcripts ("refGene") from mouse ("mm10") library(GenomicFeatures) library(dplyr) refSeq <- makeTxDbFromUCSC(genom="mm10",tablename="refGene") ...
written 2.2 years ago by marcosmorgan90
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Answer: A: How To Upload Repeat Mask Fasta File On Igv (Integrative Genomics Viewer)
... You can convert your .out file to a .gff3 file using the file converter provided by repeatMasker. Then you can load the .gff3 file to IGV. You can get the converter from here. (Follow the installation steps 1 and 2 if you do not want to install and configure all repeatMasker). Then from the folder ...
written 5.4 years ago by marcosmorgan90
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Answer: A: How To Edit A Bam File With Bio::Db::Bam
... I went through the Bio::DB::Bam::Alignment documentation and found this under “Low-level Bio::DB::Bam::Alignment methods”: These methods are available to objects of type Bio::DB::Bam::Alignment as well as Bio::DB::Bam::AlignWrapper and closely mirror the native C API. ... $tid = $a ...
written 5.4 years ago by marcosmorgan90

Latest awards to marcosmorgan

Appreciated 9 months ago, created a post with more than 5 votes. For A: Easy Way To Get 3' Utr Lengths Of A List Of Genes
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: How To Edit A Bam File With Bio::Db::Bam
Teacher 4.6 years ago, created an answer with at least 3 up-votes. For A: How To Edit A Bam File With Bio::Db::Bam

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