User: Tg

gravatar for Tg
Tg310
Reputation:
310
Status:
Trusted
Location:
Thailand
Last seen:
6 months ago
Joined:
9 years, 4 months ago
Email:
y*****@gmail.com

Posts by Tg

<prev • 17 results • page 1 of 2 • next >
0
votes
0
answers
138
views
0
answers
Finding a genome base on kbase id?
... I am currently validating a data I just got. It is a list of genome with name, img id, and kbase id. The problem is that I couldn't find the way to work with kbase's except an outdated API, and obscure web interface. Could anyone point me out where does kbase (https://kbase.us) store the informatio ...
genome written 8 months ago by Tg310
0
votes
1
answer
3.8k
views
1
answers
Comment: C: Is Newbler still available for download
... I emailed them for two times and get no reply from then. Any chance that you share the software with me?. Thank you so much. ...
written 10 months ago by Tg310
0
votes
5
answers
27k
views
5
answers
Comment: C: How Can I Know The Length Of Mapped Reads From Bam File?
... I know that this comment is old, but since it is on the first page of google... You forgot to open a file in your example. ...
written 2.3 years ago by Tg310
1
vote
12
answers
34k
views
12
answers
Comment: C: Will Python Take The Place Of R?
... I won't call matplotlib a simple package to install. Also, in my experience, I have some trouble with R package that require some external dependency. ...
written 6.8 years ago by Tg310
0
votes
3
answers
11k
views
3
answers
Comment: C: Visualize Chromosome With Python ?
... Thanks, exactly a great start for me. ...
written 8.6 years ago by Tg310
5
votes
10
answers
23k
views
10
answers
Answer: A: Get All The Genes In A Pathway (E.G. Kegg)
... Since you mention that you need to do enrichment with reactome pathway and several data source, I suggest that you should get data from http://www.broadinstitute.org/gsea/downloads.jsp, it contains pathways-gene data from kegg, reactome, biocarta and some GO as well. ...
written 8.6 years ago by Tg310
39
votes
3
answers
11k
views
17 follow
3
answers
Visualize Chromosome With Python ?
... http://biostar.stackexchange.com/questions/378/drawing-chromosome-ideogams-with-data <- related Is there library could visualize chromosome like in above thread in python ? Mainly, draw chromosome, mapping gene, color/dot plot on interest region. If not, is it possible to do that in matplotlib ...
python visualization chromosome written 8.6 years ago by Tg310 • updated 8.6 years ago by Gentle Yang190
1
vote
73
answers
32k
views
73
answers
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
... I always wonder if they have ever check the program/code that come with paper. In one paper, they hardcode the input file in code, make me waste a whole afternoon to figure out what's the hell wrong with it. ...
written 8.8 years ago by Tg310
0
votes
2
answers
2.0k
views
2
answers
Comment: C: Calculating Ld In Entire Chromosome From Ensembl Database ?
... Ok, I tried that, but dereference a hash seems to be like 100x faster. ...
written 8.8 years ago by Tg310
0
votes
2
answers
2.0k
views
2
answers
Comment: C: Calculating Ld In Entire Chromosome From Ensembl Database ?
... The reason I choose 200k is that I want to compare it with LD from hapmap. They use 200k from test marker. But thanks for the tips. ...
written 8.8 years ago by Tg310

Latest awards to Tg

Epic Question 10 months ago, created a question with more than 10,000 views. For Visualize Chromosome With Python ?
Librarian 2.6 years ago, created a post with more than 10 bookmarks. For Visualize Chromosome With Python ?
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Visualize Chromosome With Python ?
Great Question 4.2 years ago, created a question with more than 5,000 views. For Visualize Chromosome With Python ?
Supporter 5.9 years ago, voted at least 25 times.
Appreciated 8.6 years ago, created a post with more than 5 votes. For A: Get All The Genes In A Pathway (E.G. Kegg)
Teacher 8.6 years ago, created an answer with at least 3 up-votes. For A: Get All The Genes In A Pathway (E.G. Kegg)
Good Question 8.6 years ago, asked a question that was upvoted at least 5 times. For Visualize Chromosome With Python ?
Appreciated 8.6 years ago, created a post with more than 5 votes. For Visualize Chromosome With Python ?
Popular Question 8.6 years ago, created a question with more than 1,000 views. For Visualize Chromosome With Python ?
Student 8.6 years ago, asked a question with at least 3 up-votes. For Visualize Chromosome With Python ?
Teacher 9.1 years ago, created an answer with at least 3 up-votes. For A: Which Application Is Truly Missing In Bioinformatics?
Appreciated 9.1 years ago, created a post with more than 5 votes. For Any Recommendation On Program That Could Simulate Gwa Case/Control Data ?
Student 9.1 years ago, asked a question with at least 3 up-votes. For Any Recommendation On Program That Could Simulate Gwa Case/Control Data ?
Popular Question 9.1 years ago, created a question with more than 1,000 views. For Any Recommendation On Program That Could Simulate Gwa Case/Control Data ?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1036 users visited in the last hour