User: Tg

gravatar for Tg
Tg310
Reputation:
310
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Location:
Thailand
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3 days, 12 hours ago
Joined:
7 years, 10 months ago
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Posts by Tg

<prev • 15 results • page 1 of 2 • next >
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Comment: C: How Can I Know The Length Of Mapped Reads From Bam File?
... I know that this comment is old, but since it is on the first page of google... You forgot to open a file in your example. ...
written 9 months ago by Tg310
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Comment: C: Will Python Take The Place Of R?
... I won't call matplotlib a simple package to install. Also, in my experience, I have some trouble with R package that require some external dependency. ...
written 5.2 years ago by Tg310
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Comment: C: Visualize Chromosome With Python ?
... Thanks, exactly a great start for me. ...
written 7.1 years ago by Tg310
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Answer: A: Get All The Genes In A Pathway (E.G. Kegg)
... Since you mention that you need to do enrichment with reactome pathway and several data source, I suggest that you should get data from http://www.broadinstitute.org/gsea/downloads.jsp, it contains pathways-gene data from kegg, reactome, biocarta and some GO as well. ...
written 7.1 years ago by Tg310
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Visualize Chromosome With Python ?
... http://biostar.stackexchange.com/questions/378/drawing-chromosome-ideogams-with-data <- related Is there library could visualize chromosome like in above thread in python ? Mainly, draw chromosome, mapping gene, color/dot plot on interest region. If not, is it possible to do that in matplotlib ...
python visualization chromosome written 7.1 years ago by Tg310 • updated 7.1 years ago by Gentle Yang190
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
... I always wonder if they have ever check the program/code that come with paper. In one paper, they hardcode the input file in code, make me waste a whole afternoon to figure out what's the hell wrong with it. ...
written 7.3 years ago by Tg310
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Comment: C: Calculating Ld In Entire Chromosome From Ensembl Database ?
... Ok, I tried that, but dereference a hash seems to be like 100x faster. ...
written 7.3 years ago by Tg310
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Comment: C: Calculating Ld In Entire Chromosome From Ensembl Database ?
... The reason I choose 200k is that I want to compare it with LD from hapmap. They use 200k from test marker. But thanks for the tips. ...
written 7.3 years ago by Tg310
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Comment: C: Calculating Ld In Entire Chromosome From Ensembl Database ?
... thanks for a tip about de-reference, I didn't knew that. I will try that. ...
written 7.3 years ago by Tg310
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Calculating Ld In Entire Chromosome From Ensembl Database ?
... Hi, I tried to calculate LD from ensembl-variation database with perl-api. I want a LD from entire chromosome for SNP with at most 200k for others. The output is something like this Output.chr1 rsid,rsid,r_square 10045830,10036350,0.8 10045830,10076494,0.4 Here's my current code htt ...
linkage ensembl api written 7.3 years ago by Tg310 • updated 7.3 years ago by Larry_Parnell16k

Latest awards to Tg

Librarian 13 months ago, created a post with more than 10 bookmarks. For Visualize Chromosome With Python ?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Visualize Chromosome With Python ?
Great Question 2.7 years ago, created a question with more than 5,000 views. For Visualize Chromosome With Python ?
Supporter 4.4 years ago, voted at least 25 times.
Appreciated 7.1 years ago, created a post with more than 5 votes. For A: Get All The Genes In A Pathway (E.G. Kegg)
Teacher 7.1 years ago, created an answer with at least 3 up-votes. For A: Get All The Genes In A Pathway (E.G. Kegg)
Popular Question 7.1 years ago, created a question with more than 1,000 views. For Visualize Chromosome With Python ?
Appreciated 7.1 years ago, created a post with more than 5 votes. For Visualize Chromosome With Python ?
Good Question 7.1 years ago, asked a question that was upvoted at least 5 times. For Visualize Chromosome With Python ?
Student 7.1 years ago, asked a question with at least 3 up-votes. For Visualize Chromosome With Python ?
Teacher 7.6 years ago, created an answer with at least 3 up-votes. For A: Which Application Is Truly Missing In Bioinformatics?
Appreciated 7.6 years ago, created a post with more than 5 votes. For Any Recommendation On Program That Could Simulate Gwa Case/Control Data ?
Student 7.6 years ago, asked a question with at least 3 up-votes. For Any Recommendation On Program That Could Simulate Gwa Case/Control Data ?
Popular Question 7.6 years ago, created a question with more than 1,000 views. For Any Recommendation On Program That Could Simulate Gwa Case/Control Data ?

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